Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,553,188 – 6,553,280 |
Length | 92 |
Max. P | 0.666187 |
Location | 6,553,188 – 6,553,280 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 77.52 |
Mean single sequence MFE | -20.40 |
Consensus MFE | -11.82 |
Energy contribution | -11.68 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.25 |
Mean z-score | -1.64 |
Structure conservation index | 0.58 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.666187 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6553188 92 - 22407834 UG-UGGCAUUGUUAUUAAUCUAUCAUUAGGUCGCCGUUGUACAACAGGCUCUAAUGAUGCGUGUAAAUGCUAAACAAAUCACACAUUCUGCCC----- ((-(((..(((((........(((((((((..((((((....))).))))))))))))((((....))))..))))).)))))..........----- ( -23.10) >DroVir_CAF1 115370 88 - 1 UAUCGUUAUUGUUAUUAAUUUGUCAUAAGGCCG-CGUUGUACAACAGGCUCUAAUGAUGCAUGUAAAUGCAAAACAAAUCACAUGCCCA--------- ........(((((........(((((.(((((.-.(((....))).))).)).)))))((((....))))..)))))............--------- ( -18.80) >DroPse_CAF1 27349 97 - 1 UC-UGGCAUUGUUAUUAAUUCAUCAUUAAGUCGGUGUUGUACAACAAGCUCUAAUGAUGCGUGUAAAUGCUAAACAAAUGACAAGUCUGGCCCUCCAC ..-.(((.((((((((.....((((((((((...((((....)))).))).)))))))((((....))))......)))))))).....)))...... ( -22.50) >DroGri_CAF1 33607 96 - 1 CUUUGUCAUUGUUAUUAAUUUGUCAUAAGGCCG-CGUUUUACAACAGGCUCUAAUGAUGCAUGUAAAUGCAAAACAAAUGGCAACUCAACCCAAGC-C ..(((((((((((........(((((.(((((.-.(((....))).))).)).)))))((((....))))..))).))))))))............-. ( -23.70) >DroAna_CAF1 27366 81 - 1 UC-UGGCAUUGUUAUUAAUUUAUCAUUAAGUCGCCGUUGUACAACAAGCUCUAAUGAUCCGUGUAAAUGCUAAAUAAAUAAC---------------- ..-(((((((.......((..((((((((((....(((....)))..))).)))))))..))...)))))))..........---------------- ( -11.80) >DroPer_CAF1 27332 97 - 1 UC-UGGCAUUGUUAUUAAUUCAUCAUUAAGUCGGUGUUGUACAACAAGCUCUAAUGAUGCGUGUAAAUGCUAAACAAAUGACAAGUCUGGCCCUCCAC ..-.(((.((((((((.....((((((((((...((((....)))).))).)))))))((((....))))......)))))))).....)))...... ( -22.50) >consensus UC_UGGCAUUGUUAUUAAUUUAUCAUUAAGUCG_CGUUGUACAACAAGCUCUAAUGAUGCGUGUAAAUGCUAAACAAAUGACAAGUCCAGCCC_____ .........(((((((.....((((((((((....(((....)))..))).)))))))((((....))))......)))))))............... (-11.82 = -11.68 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:15 2006