Locus 2403

Sequence ID 2L_DroMel_CAF1
Location 6,549,198 – 6,549,291
Length 93
Max. P 0.526382
window3870

overview

Window 0

Location 6,549,198 – 6,549,291
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 83.15
Mean single sequence MFE -29.67
Consensus MFE -15.80
Energy contribution -18.63
Covariance contribution 2.84
Combinations/Pair 1.12
Mean z-score -2.77
Structure conservation index 0.53
SVM decision value -0.01
SVM RNA-class probability 0.526382
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6549198 93 + 22407834
GCGUCAGCUUUGGGCCUUAAACGGCUCAGCUUAGCGUUUAAUAAAGCAAAUAAGCUGAUAAAUGCCAGCGAUUGUUGGCCCCGAAUGCAACGC
((((..((((((((((......)))((((((((..((((....))))...)))))))).....((((((....)))))).))))).)).)))) ( -33.90)
>DroVir_CAF1 109407 86 + 1
GCGUCAGCUUAAGGCCUUG------ACAGCUUAGCAUUUAAUAAAACAAAUAAACUGAUAAAUGUGCGCGAG-AUUGCCCACAAAUGUGGCGC
(((((((((..((((....------...)))))))...........................((((.(((..-..))).))))....)))))) ( -18.60)
>DroSec_CAF1 21255 93 + 1
GCGUCAGCUUUGGGCCUUAAAUGGCUCAGCUCAGCGUUUAAUAAAGCAAAUAAGCUGAUAAAUGCCAGCGAUUGUUGGCCCCGAAUGCAACGC
((((((((((((((((......)))))).....((..........))....))))))))....((((((....)))))).......))..... ( -31.00)
>DroSim_CAF1 23174 93 + 1
GCGUCAGCUUUGGGCCUUAAAUGGCUCAGCUCAGCGUUUAAUAAAGCAAAUAAGCUGAUAAAUGCCAGCGAUUGUUGGCCCCGAAUGCAGCGC
((((((((((((((((......)))))).....((..........))....))))))))....((((((....))))))..........)).. ( -31.20)
>DroYak_CAF1 22312 92 + 1
GCGUCAGCUUUGGGCACUAAACAGCUCAGCUCAGCGUUUAAUAAAGCAAAUAAGCUGAUAAAUGCCAGUGAUUGUUGG-CCCGAAUGCGACGC
(((((.(((((((((....(((((.(((.((..(((((((....(((......)))..))))))).)))))))))).)-)))))).))))))) ( -35.50)
>DroAna_CAF1 23257 88 + 1
GCGUCAGCUUUGGGCCUUAAACGGCUC-----AGCAUUUAAUAAAGCAAAUAAACUGAUAAAUGCCAACGAUUUGAGGUCCCAAAUGCGAGAC
..(((.(((((((((((((((((....-----.(((((((....((........))..)))))))...)).))))))).)))))).))..))) ( -27.80)
>consensus
GCGUCAGCUUUGGGCCUUAAACGGCUCAGCUCAGCGUUUAAUAAAGCAAAUAAGCUGAUAAAUGCCAGCGAUUGUUGGCCCCGAAUGCAACGC
((((((((((((((((......)))))).....((..........))....))))))))....((((((....)))))).......))..... (-15.80 = -18.63 +   2.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:14 2006