Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 86,688 – 86,779 |
Length | 91 |
Max. P | 0.654373 |
Location | 86,688 – 86,779 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 78.91 |
Mean single sequence MFE | -28.62 |
Consensus MFE | -22.90 |
Energy contribution | -22.46 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.25 |
Mean z-score | -1.34 |
Structure conservation index | 0.80 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.654373 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 86688 91 - 22407834 GGCUAUGGCCCAAGGCUAUGCAAUAGA-----------------CACUGAAGAUAAUUGACGACCAACAUUGUUAAUAGGGGGUGCUGCCGUGUGCACCCAGAAAGCC ((((((((((...))))))........-----------------...........((((((((......))))))))...((((((........))))))....)))) ( -26.70) >DroSec_CAF1 59155 91 - 1 GGCUAUGGGCCAAGUCUAUGCAAUAGA-----------------CACUGAAGAUAAUUGACGGCCAAAAUUGUUAAUUGGGGGUGCUGCCGUGUGCACCCAGAAAGCC ((((...((((..((((((...)))))-----------------).(....).........))))...............((((((........))))))....)))) ( -28.70) >DroSim_CAF1 61649 91 - 1 GGCUAUGGGCCAAGGCUAUGCAAUAGA-----------------CACUGAAGAUAAUUGACGGCCAAAAUUGUUAAUUGGGGGUGCUGCCGUGUGCACCCAGAAAGCC (((.....)))..((((..........-----------------.........((((((((((......)))))))))).((((((........))))))....)))) ( -27.50) >DroEre_CAF1 66218 108 - 1 GGCUAUGGCCUAGGACCAUGCCAUAGACAACUUAGCAUAGGAUACACUGAAGGUUAUUGGCGAAUAAUAUUGUUAAUAGGGGGUGCUGCGGUGUGCACCCAGAAAACU (((.(((((....).)))))))...............(((......)))....((((((((((......)))))))))).((((((........))))))........ ( -29.20) >DroYak_CAF1 59298 107 - 1 GGCUUUGGCCCAUGGCCAUACCAUAAAACACUUACCAUAUGAUACACUGAAGAUUAUUGACGACCAAAAUUGUUAGUAGG-GGUGCUGCGGUGUGCACCCAGAAAGCC ((((((((((...))))....................................((((((((((......))))))))))(-(((((........))))))..)))))) ( -31.00) >consensus GGCUAUGGCCCAAGGCUAUGCAAUAGA_________________CACUGAAGAUAAUUGACGACCAAAAUUGUUAAUAGGGGGUGCUGCCGUGUGCACCCAGAAAGCC ((((((((((...))))))...........................(((....((((((((((......))))))))))..(((((........))))))))..)))) (-22.90 = -22.46 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:30 2006