Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,527,734 – 6,527,825 |
Length | 91 |
Max. P | 0.995264 |
Location | 6,527,734 – 6,527,825 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 89.79 |
Mean single sequence MFE | -16.92 |
Consensus MFE | -16.64 |
Energy contribution | -16.84 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.80 |
Structure conservation index | 0.98 |
SVM decision value | 2.56 |
SVM RNA-class probability | 0.995264 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6527734 91 + 22407834 GUUAAUUUAUUUACUUGUUAAUUAUACACUUGAACAACUUCGUGCGAGAAUUGUUACGAUCGUUGAUUAGGUGUUUAAAAACUAUAUAAUA .....................(((.((((((((.((((.((((((((...))).)))))..)))).)))))))).)))............. ( -17.60) >DroSec_CAF1 14772 91 + 1 AUUAAUUUAUUUACUUGUUAAUUACACACUUGAACAACUUCGUGCGAGAAUUGUUACGAUCGUUGAUUAGGUGUUUAAAAACUAUAUAAUA .....................(((.((((((((.((((.((((((((...))).)))))..)))).)))))))).)))............. ( -17.40) >DroSim_CAF1 14641 91 + 1 AUUAAUUUAUUUACUUGUUAAUUACACACUUGAACAACUUCGUGCGAGAAUUGUUACGAUCGUUGAUUAGGUGUUUAAAAACUAUAUAAUA .....................(((.((((((((.((((.((((((((...))).)))))..)))).)))))))).)))............. ( -17.40) >DroEre_CAF1 12429 79 + 1 AU----UU--------AUAAAUUACACACUUGAACAACUUCGUGCGAGAAUUGUUACGAUCGUGGAUUAGGUGUUUAAAAACUAUAUAAUA ..----..--------.....(((.((((((((.((...((((((((...))).)))))...))..)))))))).)))............. ( -14.50) >DroYak_CAF1 14155 82 + 1 AA----UUA-----UUAUUAAUUACACACUUGAACAACUUCGUGCGAGAAUUGUUACGAUCGUUGAUUAGGUGUUUAAAAACUAUAUAAUA .(----(((-----(......(((.((((((((.((((.((((((((...))).)))))..)))).)))))))).))).......))))). ( -17.72) >consensus AUUAAUUUAUUUACUUGUUAAUUACACACUUGAACAACUUCGUGCGAGAAUUGUUACGAUCGUUGAUUAGGUGUUUAAAAACUAUAUAAUA .....................(((.((((((((.((((.((((((((...))).)))))..)))).)))))))).)))............. (-16.64 = -16.84 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:03 2006