Locus 2396

Sequence ID 2L_DroMel_CAF1
Location 6,525,082 – 6,525,177
Length 95
Max. P 0.774981
window3857

overview

Window 7

Location 6,525,082 – 6,525,177
Length 95
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 77.62
Mean single sequence MFE -26.17
Consensus MFE -10.93
Energy contribution -11.55
Covariance contribution 0.62
Combinations/Pair 1.33
Mean z-score -2.40
Structure conservation index 0.42
SVM decision value 0.54
SVM RNA-class probability 0.774981
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6525082 95 + 22407834
GUC---------GAUGGAUUGCCAUGGAGUUUAGACC------GCAACCAACUCGUGCCGAGCUCCAUGAAAAUGCUAACUAUAAUGCUUCAUUAUAGAAGUUUUAAACC
...---------..((((((..(((((((((..(..(------(.........))..)..)))))))))..))).))).((((((((...))))))))............ ( -23.00)
>DroSec_CAF1 12175 95 + 1
UUC---------GAUGGAUUGCCAUGGAGUUCAGACC------GAAACCAACUCGUGCCGUGCUCCAUGAAAAUUCUAACUAUAAUGCUUCAUUAUAGAAGUUUUAAACC
...---------...(((((..((((((((.(.(..(------((.......)))..).).))))))))..)))))...((((((((...))))))))............ ( -24.60)
>DroSim_CAF1 12063 95 + 1
UUC---------GAUGGAUUGCCAUGGAGUUCAGACC------GAAACCAACUCGUGCCGAGCUCCAUGAAAAUGCUAACUAUAAUGCUUCAUUAUAGAAGUUUUAAACC
...---------..((((((..((((((((((.(..(------((.......)))..).))))))))))..))).))).((((((((...))))))))............ ( -27.00)
>DroEre_CAF1 9620 88 + 1
GUC---------GA----UUGGCAUGGAGUUCAGCCC------GAAACUAAUUCGUGCUGAGCUGCAUGAAAAUGCUAACUA---UGCUUCAUUAUAGAAGUUUUAAACC
...---------((----..(((((((((((((((.(------(((.....)))).))))))))((((....))))...)))---))))))................... ( -30.20)
>DroYak_CAF1 11322 92 + 1
GUC---------GAUGGAUUGCCAUGAAGUUCAGCCC------GAAACUAAUUCGUGCUGAGCUGCAUGAAAAAGCUAACUA---UGCUUCAUUAUAGAAGUUUUAAACC
...---------.((((...((((((.((((((((.(------(((.....)))).)))))))).)))).....))...)))---)(((((......)))))........ ( -26.00)
>DroPer_CAF1 18579 108 + 1
GCGGGAUACGAAGAUAGAUUACAUUUGGCUCGAAACCCAUCUGGAACCCGGCUCGUGCUGGGCUCCAUUAAAAUACUAAUUAUGCGGC--CUUUAUAGAAGCUUUAAUUC
(((((...(((...(((((...)))))..)))...)))...((((.((((((....)))))).))))................))(((--.((....)).)))....... ( -26.20)
>consensus
GUC_________GAUGGAUUGCCAUGGAGUUCAGACC______GAAACCAACUCGUGCCGAGCUCCAUGAAAAUGCUAACUAUAAUGCUUCAUUAUAGAAGUUUUAAACC
......................((((((((((...........................)))))))))).................(((((......)))))........ (-10.93 = -11.55 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:27:01 2006