| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,509,003 – 6,509,106 |
| Length | 103 |
| Max. P | 0.666763 |
| Location | 6,509,003 – 6,509,106 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 81.48 |
| Mean single sequence MFE | -22.32 |
| Consensus MFE | -14.72 |
| Energy contribution | -15.11 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.666763 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6509003 103 - 22407834 -CUUUUUCCUU----CACAUCUUUUGUCGUUUAUUAAUUUAACAAGUGCUGG-CCAUUUGCUUUUUAAUGAACAGGGCGACACAGUUUUGUCU----CUUUGUGUGUUUCAUC -..........----(((((........(((((((((.....((((((....-.))))))....)))))))))((((.((((......)))).----)))))))))....... ( -19.80) >DroPse_CAF1 40146 108 - 1 GCUCUUCCGUCCGUCGGCGUUUUUUGUCGUUUAUUAAUUUAACAAGUGCUUGCCCAUUUGCUUUUUAAUGAACAUGGCGACACACUUUUGUGUGUCACUGUGUGUGUC----- ............(((((((.....))))(((((((((.....((((((......))))))....)))))))))..)))(((((((....)))))))............----- ( -28.70) >DroEre_CAF1 31054 103 - 1 -CUUUUUCCUC----CACUUCUUUUGUCGUUUAUUAAUUUAACAAGUGCUGG-CCAUUUGCUUUUUAAUGAACAGGGCGACACAGUUUUGUCU----CUUUGUGUGUUUCAUC -..........----(((..........(((((((((.....((((((....-.))))))....)))))))))((((.((((......)))).----)))))))......... ( -17.90) >DroYak_CAF1 31816 103 - 1 -CUUUUUCCUC----CACUUCUUUUGUCGUUUAUUAAUUUAACAAGUGCUGG-CCAUUUGCUUUUUAAUGAACAGGGCGACACAGUUUUGUCU----CUUUGUGUGUUUCAUC -..........----(((..........(((((((((.....((((((....-.))))))....)))))))))((((.((((......)))).----)))))))......... ( -17.90) >DroAna_CAF1 37306 96 - 1 UCUCUCUCCGG----CAUUUCUUUUGUCGUUUAUUAAUUUAACAUGUGCUGG-CCAUUUGCUUUUUAAUGAACAGGGCGACACAGUUUUGUGU----CUUCUCG--------A ........(((----((.......)))))................((.(((.-.((((........))))..))).))(((((......))))----)......--------. ( -20.90) >DroPer_CAF1 40528 108 - 1 GCUCUUCCGUCCGUCGGCGUUUUUUGUCGUUUAUUAAUUUAACAAGUGCUUGCCCAUUUGCUUUUUAAUGAACAUGGCGACACACUUUUGUGUGUCACUGUGUGUGUC----- ............(((((((.....))))(((((((((.....((((((......))))))....)))))))))..)))(((((((....)))))))............----- ( -28.70) >consensus _CUCUUUCCUC____CACUUCUUUUGUCGUUUAUUAAUUUAACAAGUGCUGG_CCAUUUGCUUUUUAAUGAACAGGGCGACACAGUUUUGUCU____CUUUGUGUGUU____C ........................(((((((((((((.....((((((......))))))....)))))))))..))))((((((..............))))))........ (-14.72 = -15.11 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:58 2006