Locus 2392

Sequence ID 2L_DroMel_CAF1
Location 6,507,584 – 6,507,676
Length 92
Max. P 0.854595
window3852

overview

Window 2

Location 6,507,584 – 6,507,676
Length 92
Sequences 4
Columns 97
Reading direction forward
Mean pairwise identity 80.18
Mean single sequence MFE -17.60
Consensus MFE -9.50
Energy contribution -9.75
Covariance contribution 0.25
Combinations/Pair 1.13
Mean z-score -2.51
Structure conservation index 0.54
SVM decision value 0.80
SVM RNA-class probability 0.854595
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6507584 92 + 22407834
CAAUCUAAAUUACCACAAAAUCCCAGCUGCUCCGCCAACUUAGCUGAAAACACCUCCACU-----UCACUCCGCCAACUGGAGUAUAUCCACCUGGG
.....................(((((.((.((.((.......)).)).............-----..((((((.....)))))).....)).))))) ( -15.40)
>DroSim_CAF1 30431 97 + 1
CAAUCUAAAUUACCACAAAAUCCCAGCUGCUCCGCCAACCAUGCUGGAAACACCUCCACUGCACUCCACUCCGCCAACUGGUAUAUAUCCACCUGGG
.....................(((((.((............(((((((......))))..))).........(((....))).......)).))))) ( -15.90)
>DroEre_CAF1 29579 85 + 1
CAAUCUAAAUUGCCACAAAGUCCCAGCCGCUCCGGCAACCUUCCUGGGCACACCUCCA----------CUCCACCACCUGGA--ACAUCCACCUGGG
..........((((.((........((((...))))........))))))........----------.....(((..(((.--....)))..))). ( -17.19)
>DroYak_CAF1 30390 85 + 1
CAAUCUAAAUUACCACAAAAUCCCAGCUGCAUCGGCAACCUUCCUGGGAACACCUCCA----------CUCCAGCACCUGGA--ACAACCAGCUGGG
.....................((((((((....((...(((....)))....))....----------.(((((...)))))--.....)))))))) ( -21.90)
>consensus
CAAUCUAAAUUACCACAAAAUCCCAGCUGCUCCGCCAACCUUCCUGGAAACACCUCCA__________CUCCACCAACUGGA__ACAUCCACCUGGG
.....................(((((.((...............((((......))))...........((((.....)))).......)).))))) ( -9.50 =  -9.75 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:57 2006