Locus 2391

Sequence ID 2L_DroMel_CAF1
Location 6,506,408 – 6,506,499
Length 91
Max. P 0.960007
window3851

overview

Window 1

Location 6,506,408 – 6,506,499
Length 91
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 91.65
Mean single sequence MFE -11.90
Consensus MFE -11.04
Energy contribution -10.88
Covariance contribution -0.16
Combinations/Pair 1.08
Mean z-score -1.53
Structure conservation index 0.93
SVM decision value 1.51
SVM RNA-class probability 0.960007
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6506408 91 + 22407834
UAACAUUUUCGCUAAGCUCGUUUUUGUUUUAUGCUUUCUAUUUCAAUUUUUUUC------UUUUUUAAGGAGCACAUCCAACGCGAAACAAAUUUCC
......((((((.((((........))))..(((((..((..............------.....))..)))))........))))))......... ( -11.91)
>DroSec_CAF1 28471 85 + 1
UAACAUUUUCGCUAAGCUCGUUUUUGUUUUAUGCUUUCUAUUUCUAUUUU------------UUUUAAGGAGCACAUCCAACGCGAAACAAAUUUCC
......((((((.((((........))))..(((((..((..........------------...))..)))))........))))))......... ( -12.32)
>DroSim_CAF1 29261 91 + 1
UAACAUUUUCGCUAAGCUCGUUUUUGUUUUAUGCUUUCUAUUUCUAUUUUUUUU------UUUUUUAAGGAGCACAUCCAACGCGAAACAAAUUUCC
......((((((.((((........))))..(((((..((..............------.....))..)))))........))))))......... ( -11.91)
>DroEre_CAF1 28380 91 + 1
UAACAUUUUCGCUAAGCUCGUUUUUGUUUUAUGCUUUCUAUUUCUUUUUUUCUU------AUUUUUAAGGAGCCCAUCCAACGCGAAACAAAUUUCC
......((((((.((((...............))))............((((((------(....)))))))..........))))))......... ( -11.76)
>DroYak_CAF1 29147 97 + 1
UAACAUUUUCGCUAAGCUCGUUUUUGUUUUAUGCUUUCUAUUUCUUUUUUCUUUUUUGUAUUUUUUAAGGAGCACAUUCAACGCGAAACAAAUUUCC
......((((((.((((........))))..(((((..((.........................))..)))))........))))))......... ( -11.61)
>consensus
UAACAUUUUCGCUAAGCUCGUUUUUGUUUUAUGCUUUCUAUUUCUAUUUUUUUU______UUUUUUAAGGAGCACAUCCAACGCGAAACAAAUUUCC
......((((((.((((...............))))................................(((.....)))...))))))......... (-11.04 = -10.88 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:56 2006