Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,499,503 – 6,499,622 |
Length | 119 |
Max. P | 0.765307 |
Location | 6,499,503 – 6,499,622 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 77.48 |
Mean single sequence MFE | -36.02 |
Consensus MFE | -23.03 |
Energy contribution | -21.45 |
Covariance contribution | -1.58 |
Combinations/Pair | 1.50 |
Mean z-score | -1.52 |
Structure conservation index | 0.64 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.765307 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6499503 119 - 22407834 GAUCAUGUCGGCGUAGUCGCAGUUGAGCAGGUUCUUCAGGUUCUGCACGGCCAGCUCCUGAUCGUCAGGAUCGCGGAUCUGCUUGAUGCCGAAGUCGAGCAGCGGCUCAUAGUGAUAGA .(((((.(((((((....)).((..(((((((((....(((((((.(((..(((...)))..))))))))))..)))))))))..)))))))....((((....))))...)))))... ( -49.00) >DroVir_CAF1 22365 119 - 1 GGACAUAUCACCAUAAUCACAAUUGAGCAGAUUCUUUAGAUUUUGCACGGCCAACUGUUGAUCCUCGGGAUCACGCACCUGCUUAAUGCCAAAAUCCAACAGCGGCUCAUAGUGAUAAU ((........))...(((((.(((((((((..((....))...(((((((....))))((((((...)))))).))).)))))))))(((.............))).....)))))... ( -28.82) >DroGri_CAF1 26402 119 - 1 GGUCAUGUCACCGUAAUCACAAUUGAGCAGAUUCUUCAGAUUUUGUACGGCCAACUGCUGAUCGUCCGGAUCACGCACCUGCUUGAUGCCAAAGUCCAGCAACGGUUCAUAGUGAUAAU (((......)))...(((((...((((((((.((....)).)))))...(((...((((((((.....))))).)))..((((.(((......))).))))..))))))..)))))... ( -29.80) >DroWil_CAF1 27310 119 - 1 CUGCAUAUCUGAAUAGUCGCACUGGAGCAAAUUUUUUAGAUUUUGCACGGCCAAAAUUUGGUCAUCGGGAUCCCGUAUCUGCUUAAUGCCAAAAUCUAAGAGUGGUUCGUAGUGAUAGA ................((.(((((((((....(((((((((((((((.(((((.....)))))..(((....)))...........)).)))))))))))))..)))).)))))...)) ( -33.20) >DroMoj_CAF1 22878 119 - 1 GGACAUAUCGGCGUAAUCACAAUUGAGCAAAUUCUUAAGAUUUUGUACAGCGAAUUGUUGUUCCUCAGGCUCGCGCACUUGUUUAAUGCCAAAAUCUAACAGUGGCUCAUAGUGAUAGU ...............(((((...(((((.....((..((((((((....((((.(((........)))..))))(((.........)))))))))))...))..)))))..)))))... ( -26.10) >DroAna_CAF1 23071 119 - 1 CAUCAUAUCGGCGUAGUCGCAAUUGAGCAGGUUCUUCAGAUUCUGGACGGCCAGUUCCUGGUCGUCGGGAUCACGGAUUUGCUUGAUCCCGAAGUCGAGCAGCGGCUCGUAAUGAUAGA .(((((....(((.((((((.((..(((((((((....(((((((.((((((((...)))))))))))))))..)))))))))..))..((....))....))))))))).)))))... ( -49.20) >consensus GGUCAUAUCGGCGUAAUCACAAUUGAGCAGAUUCUUCAGAUUUUGCACGGCCAACUGCUGAUCGUCGGGAUCACGCACCUGCUUAAUGCCAAAAUCCAACAGCGGCUCAUAGUGAUAGA ...............(((((...(((((..........(((((((((.(((....((((((((.....))))).)))...)))...)).)))))))........)))))..)))))... (-23.03 = -21.45 + -1.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:55 2006