Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,499,204 – 6,499,303 |
Length | 99 |
Max. P | 0.982338 |
Location | 6,499,204 – 6,499,303 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 75.03 |
Mean single sequence MFE | -40.23 |
Consensus MFE | -17.86 |
Energy contribution | -18.42 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.28 |
Mean z-score | -2.63 |
Structure conservation index | 0.44 |
SVM decision value | 1.91 |
SVM RNA-class probability | 0.982338 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6499204 99 - 22407834 GUAGCUGUCAGAUUGUAGACGGCCGUCUGCGACGACUGCUGCUGCUGCUGCAAUUGCUGCUGGAAGCGAUCGUAGAAGGCGCUGCGCGCCAGCGAAUUG (((((.(((.(.((((((((....)))))))))))).)))))((((.((((.((((((......)))))).))))..(((((...)))))))))..... ( -43.70) >DroPse_CAF1 28208 93 - 1 GUAGCUGUCAGGUUGUAGACGACAGUCUGCGAGGGCUGCU------GCUGCAUCUGCUGCUGCAGGCGUUCGUAGAAGGAGUUGCGGCCUAGGCUGUUG .(((((...(((((((((.(..(..((((((((.(((((.------((.((....)).)).))).)).)))))))).)..)))))))))).)))))... ( -41.60) >DroEre_CAF1 21319 96 - 1 GUAGCUGUCAGAUUGUAGACGGCCGUCUGCGACGGCUGCU---GCUGCUGCAGUUGCUGCUGGAAGCGAUCAUAGAAGGCGCUGCGCGCCAGCGAAUUG (((((((.(((...((((.((((((((...))))))))))---))..))))))))))((((((.((((.((......)))))).....))))))..... ( -46.40) >DroWil_CAF1 27023 87 - 1 GUGGCUGUGAGAUUAUAAACAGUCGUCUGAGAGACCGACA------------GCUGCGAUUGAAAUCGUUCAUAGAGACUAUUGCGAUUCAGAGAAUUU (..(((((..((((......))))(((.....)))..)))------------))..)..(((((.((((..((((...)))).)))))))))....... ( -21.70) >DroYak_CAF1 21742 96 - 1 GUAGCUGUCAGAUUGUAGACGGCCGUCUGCGACGGCUGCU---GCUGCUGCAGUUGCUGCUGGAAGCGAUCAUAGAAGGCGCUGCGCGCCAGCGAAUUG (((((((.(((...((((.((((((((...))))))))))---))..))))))))))((((((.((((.((......)))))).....))))))..... ( -46.40) >DroPer_CAF1 28541 93 - 1 GUAGCUGUCAGGUUGUAGACGACAGUCUGCGAGGGCUGCU------GCUGCAUCUGCUGCUGCAGGCGUUCGUAGAAGGAGUUGCGGCCUAGGCUGUUG .(((((...(((((((((.(..(..((((((((.(((((.------((.((....)).)).))).)).)))))))).)..)))))))))).)))))... ( -41.60) >consensus GUAGCUGUCAGAUUGUAGACGGCCGUCUGCGACGGCUGCU______GCUGCAGCUGCUGCUGGAAGCGAUCAUAGAAGGCGCUGCGCGCCAGCGAAUUG (((((.(((...((((((((....)))))))).))).(((......((.((....)).))....))).............))))).((....))..... (-17.86 = -18.42 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:54 2006