Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,497,768 – 6,497,879 |
Length | 111 |
Max. P | 0.526146 |
Location | 6,497,768 – 6,497,879 |
---|---|
Length | 111 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 80.18 |
Mean single sequence MFE | -29.92 |
Consensus MFE | -21.75 |
Energy contribution | -21.70 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.26 |
Mean z-score | -1.09 |
Structure conservation index | 0.73 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.526146 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6497768 111 + 22407834 AAAUUCCACAUUUCUAGCCUAAAUCUGAACAUCAUGCUGCUUGUUCGCGAUCCUCGGGGCACCAUAUAUUCCCGAAUGAAUAACAAGUGGUGUUCGGAUGAGAGGGAUUGC .................(((..(((((((((((((..((.(((((((......((((((..........)))))).))))))))).)))))))))))))...)))...... ( -33.30) >DroSec_CAF1 20059 111 + 1 AAAUUCCACAUAUCUAGCCUUAAUCUGAACAUCCUUUUACUUGUCCGCGAUCCUCGGGGCACCAUAUAUUCCCGAAUGAAUAACAAGUGGUGUUCGGAUGAGAGGGAUUGC .................((((.((((((((((((((.....(((((.((.....))))))).....(((((......)))))..))).)))))))))))..))))...... ( -30.70) >DroSim_CAF1 20925 111 + 1 AAAGUACUCAUCUCUAGCCUAAAUCUGAACAUCCUUUUACUUGUCCGCGAUCCUCGGGGCACCAUAUAUUCCCGAAUGAAUAACAAGUGGUGUUCGGAUGAGAGGGAUUGC ...(((.((.(((((.......((((((((((((((.....(((((.((.....))))))).....(((((......)))))..))).))))))))))).))))))).))) ( -31.30) >DroEre_CAF1 19872 111 + 1 AAAUUCCUCAUUUCUAGACUGCAUUUGAGCAUCCUACUGCUUGUCCGCGAUCCUCGAGGCACCAUUUAUUCCCGAAUGAAUAACAAGUGGUGCUUGAAUGAAAGGGAUUGC .((((((((((((...((.(((...((((((......))))))...))).))....(((((((((((((((......))))))...)))))))))))))))..)))))).. ( -31.90) >DroYak_CAF1 20301 111 + 1 AAGCUCCUUAUUUCUAGUCUUAAUUUAACCAUCCUGCUGCUUGUCCGCGAUCCUCGGGGCACCAUAUACUCCCGGAUGAGUAACAAGUGGUGCUUGGAUGAAAGGGAUUGC ..((((((..((((..((((.......(((((..((.((((..((((.((.....((....))......)).))))..)))).)).)))))....))))))))))))..)) ( -28.60) >DroAna_CAF1 21138 111 + 1 AAAUUUUUCUCUUCCAGAUUGAAUCUUCGAAUCCUUUUACUCGUCCGUGAUCCCCGGGGCACGAUGUAUUCACGGAAGAAUCGGAAUUGGUGCGAUGGCCUGAAGGACUGC ...((((((((((((.((((((....)).))))....(((((((((.((.....)).)).)))).))).....))))))((((.(.....).)))).....)))))).... ( -23.70) >consensus AAAUUCCUCAUUUCUAGCCUAAAUCUGAACAUCCUUCUACUUGUCCGCGAUCCUCGGGGCACCAUAUAUUCCCGAAUGAAUAACAAGUGGUGCUCGGAUGAGAGGGAUUGC ..............................................(((((((((.(((((((((.(((((......)))))....))))))))).))......))))))) (-21.75 = -21.70 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:53 2006