Locus 2386

Sequence ID 2L_DroMel_CAF1
Location 6,488,674 – 6,488,770
Length 96
Max. P 0.796275
window3846

overview

Window 6

Location 6,488,674 – 6,488,770
Length 96
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 89.24
Mean single sequence MFE -21.94
Consensus MFE -17.86
Energy contribution -19.04
Covariance contribution 1.19
Combinations/Pair 1.12
Mean z-score -1.78
Structure conservation index 0.81
SVM decision value 0.60
SVM RNA-class probability 0.796275
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6488674 96 + 22407834
CUAGAGCUUAGCUUGAAACAAUUCAAGUCUAACCGGAUUGCCAAAGUUGAGCAGAACCGUUAGCUUUUAACGUAUAACUAAGCUUUCGUACUAAUU
..(((((((((((((((....)))))).(((((.(..((((((....)).))))..).)))))..............))))))))).......... ( -22.70)
>DroSec_CAF1 11033 96 + 1
UUAGAGCUUAGCUUGAAGCAAUUCAAGUCUAACCGGAUUGCCAAAGUUGAGCAGAACCGUUAGCUUUUAACGUUUAACUAAGCUUUCGCACUAAUU
((((.(((((((((...(((((((..........)))))))..))))))))).....((..(((((.............)))))..))..)))).. ( -25.92)
>DroSim_CAF1 11635 96 + 1
UUAGAGCUUAGCUUCAAGCAAUUCAAGUCUAACCGGAUUGCCAAAGUUGAGCAGAACCGUUAGCUUUUAACGUUUAACUAAGCUUUCGCACUAAUU
((((.(((((((((...(((((((..........)))))))..))))))))).....((..(((((.............)))))..))..)))).. ( -24.82)
>DroYak_CAF1 11178 90 + 1
UUAGAGCUCAGUUG------CUUCAAGUCAAACCGGAUUGCCAAGGUUGAACCAAACCGUUAGCUUUUAACGUAUAAUUAAGCUUUCGCACUAAUU
...((((......)------)))..((((......))))((...((((......))))(..(((((.............)))))..)))....... ( -14.32)
>consensus
UUAGAGCUUAGCUUGAAGCAAUUCAAGUCUAACCGGAUUGCCAAAGUUGAGCAGAACCGUUAGCUUUUAACGUAUAACUAAGCUUUCGCACUAAUU
.(((.(((((((((...(((((((..........)))))))..))))))))).....((..(((((.............)))))..))..)))... (-17.86 = -19.04 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:51 2006