Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,482,653 – 6,482,838 |
Length | 185 |
Max. P | 0.993865 |
Location | 6,482,653 – 6,482,771 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 77.26 |
Mean single sequence MFE | -41.00 |
Consensus MFE | -24.06 |
Energy contribution | -24.25 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.31 |
Mean z-score | -2.26 |
Structure conservation index | 0.59 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941578 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6482653 118 - 22407834 CUUUCCAGGCAAUGAGCCAUUCCGUUGGUUCUGUUGCUGCUGCAAUUGAAUGCUCACGGGUCUAAGUGGCUGUUGCUGCUGCAACGAUACCUGCUGCAAUUGGCUAAUAGAAGCUAUA .......((((((.(((((((((((.(((((.(((((....))))).))..))).))))).....))))))))))))((.(((........))).))...(((((......))))).. ( -38.00) >DroSec_CAF1 5080 109 - 1 CUCCGUAGGCAAUGGGCCACCCA---------GUUGCUGCUGCAAUUGAAUGCUCACCGGUCUAAGUGGCUGUUGCUGCUGCAACGGUAGCUGAUUUAUUUGGCUAACAGAAGCCAUA .....(((((..(((((....((---------(((((....)))))))...)))))...))))).(((((((((((....)))))(.((((..(.....)..)))).)...)))))). ( -41.40) >DroSim_CAF1 5376 118 - 1 CUGUGUAGGCAAUGGGCCAUUCCGUUGGAUCUGUUGCUGCUGCAAUUGAAUGCUCACCGGUCUAAGUGGCUGUUGCUGCUGCAAUGGUAGCUGAUUUAUUUGGCUAACAGAAGCCAUA .......((((((((((((......))).)))))))))(((((.((((...((.((.(((((.....))))).))..))..)))).))))).........(((((......))))).. ( -39.30) >DroYak_CAF1 4989 118 - 1 UUGCGUAGCCAAUUGGACACCAAUUGGCUUCUGUGGCUGCUGCAGCCGAAUACCCACCGGUCUAAGUGGCUGCUGCUGUUGCACCUGUAUCUGCUGCAAUUGACCCAGAGUAGCUAUA ....(.((((((((((...)))))))))).)(((((((((((((((((...(((....))).....)))))))..(.((((((.(.......).)))))).)......)))))))))) ( -45.30) >consensus CUGCGUAGGCAAUGGGCCACCCAGUUGGUUCUGUUGCUGCUGCAAUUGAAUGCUCACCGGUCUAAGUGGCUGUUGCUGCUGCAACGGUAGCUGAUGCAAUUGGCUAACAGAAGCCAUA .......(((..(((((((...........(((((((.((.(((((.....((.(((........))))).))))).)).))))))).............)))))..))...)))... (-24.06 = -24.25 + 0.19)
Location | 6,482,733 – 6,482,838 |
---|---|
Length | 105 |
Sequences | 3 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 71.43 |
Mean single sequence MFE | -40.43 |
Consensus MFE | -25.71 |
Energy contribution | -27.17 |
Covariance contribution | 1.46 |
Combinations/Pair | 1.22 |
Mean z-score | -1.91 |
Structure conservation index | 0.64 |
SVM decision value | 2.43 |
SVM RNA-class probability | 0.993865 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6482733 105 - 22407834 UAGGCAACGGCCCACGUGGUAGCUUCUCUUGCUGCGCAGGCACUGGGCAUUCCAGUGGCUUCUGUUGCUUUCCAGGCAAUGAGCCAUUCCGUUGGUUCUGUUGCU .(((((((((.....(((.((((.......)))))))((.((((((.....)))))).)).)))))))))....((((((((((((......)))))).)))))) ( -43.10) >DroSec_CAF1 5160 96 - 1 UAGGCAAUGGGCCCACCAGUGGCACGUCUAGCUCCGUAGGCAAUGGGCCACGCAGUAUCUCGUCUGGCUCCGUAGGCAAUGGGCCACCCA---------GUUGCU ..((((((.((((((....((.(..(((((......))))).((((((((.((........)).)))).)))).).)).)))))).....---------)))))) ( -36.30) >DroSim_CAF1 5456 105 - 1 UAGGCAAUGGCCCACGUGGUAGCUUCCCUUGCUGCGUAGGAACUGGGCAUCCCAGUGGCUUCUGUUGCUGUGUAGGCAAUGGGCCAUUCCGUUGGAUCUGUUGCU ..((((((((.(((((..((((......))))..))).(((((((((...))))))(((..((((((((.....)))))))))))..)))...))..)))))))) ( -41.90) >consensus UAGGCAAUGGCCCACGUGGUAGCUUCUCUUGCUGCGUAGGCACUGGGCAUCCCAGUGGCUUCUGUUGCUCUGUAGGCAAUGGGCCAUUCCGUUGG_UCUGUUGCU ..((((((.((((((.(((((((.......))))).)).)...)))))......(((((((..((((((.....)))))))))))))............)))))) (-25.71 = -27.17 + 1.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:48 2006