Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,482,435 – 6,482,539 |
Length | 104 |
Max. P | 0.986561 |
Location | 6,482,435 – 6,482,539 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 89.71 |
Mean single sequence MFE | -31.58 |
Consensus MFE | -25.34 |
Energy contribution | -26.94 |
Covariance contribution | 1.60 |
Combinations/Pair | 1.15 |
Mean z-score | -2.46 |
Structure conservation index | 0.80 |
SVM decision value | 2.05 |
SVM RNA-class probability | 0.986561 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6482435 104 + 22407834 CCCGGGUCAAAAAUAAUACCGGCUUCGAAUGCGAUGCCUGCAAAGAUUCAACCCAUUCUUGGGAUGGGUCAGCCUCAGCAACAGGCACAAGCCCAGCAACCGAA ..(((...............(((.(((....))).)))(((...((((((.((((....)))).)))))).((((.......)))).........))).))).. ( -32.90) >DroSec_CAF1 4862 104 + 1 CCCGGGUCAAAAAUAAUACCGGCGUCGAAAGCGAUGCCUGCUAAGAUCCAACCCAUUCUUGGGAUGGGUCAGCCUCCGCAACAGGCACAAGCCCAGCAACCGAA ..(((...............(((((((....)))))))((((..((((((.((((....)))).)))))).((((.......))))........)))).))).. ( -40.30) >DroSim_CAF1 5160 103 + 1 CCCGGGUCAAAAAUAAUACCGGCGUCAAAAGCGACGCCUGCUAAAAUCCAACCCAUUCUUGGGAUGGGUCAGCCUCCGCAACA-GCACAAGCCCAGCAACCGAA ...((((.............((((((......))))))((((...(((((.((((....)))).)))))..((....))...)-)))...)))).......... ( -33.20) >DroEre_CAF1 4807 104 + 1 CCCGGGUCAAAAAUCAUCCCGGUGUCAAAAGCAACGCCUGCAAAGAUUCAACCCGUUCUUGGGAUAGGUCAGCCUCAACAACAGCCACAAGCCCAGCAACCGAA ...((((........((((((((((........)))))....((((..........)))))))))(((....)))...............)))).......... ( -21.90) >DroYak_CAF1 4765 104 + 1 CCCGGUUCAAAAAUCAUCCCUGCGUCGAAAGCAAUGCCUGCAAAGAUUCAACCCGUUCUUGGGAUAGGUCAGCCUCAGCAACAGUCGCAGGCCCAGCAACCGAA ..((((((............(((.......)))..((((((...(((..(.((((....)))).)..))).((....)).......))))))...).))))).. ( -29.60) >consensus CCCGGGUCAAAAAUAAUACCGGCGUCGAAAGCGAUGCCUGCAAAGAUUCAACCCAUUCUUGGGAUGGGUCAGCCUCAGCAACAGGCACAAGCCCAGCAACCGAA ..(((...............(((((((....)))))))(((...((((((.((((....)))).)))))).((((.......)))).........))).))).. (-25.34 = -26.94 + 1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:46 2006