Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,478,886 – 6,479,006 |
Length | 120 |
Max. P | 0.589530 |
Location | 6,478,886 – 6,479,006 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.56 |
Mean single sequence MFE | -42.02 |
Consensus MFE | -32.17 |
Energy contribution | -31.73 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.28 |
Mean z-score | -2.33 |
Structure conservation index | 0.77 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.589530 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6478886 120 - 22407834 GUGCUGCCAGAUCCCGCUUUUCGGUAUCAUGAGCUCAGACUCGGCGGAUCCCUUCUACUGGAUCCGUGUGAUCCUGGCCUCCAACCGUGGUACGCUCAUGGAGCUGGGUAUCUCGCCCAU ((((..(..(((.(((.....))).)))..(((..(((..(((((((((((........)))))))).)))..)))..))).....)..))))((((...))))(((((.....))))). ( -44.60) >DroVir_CAF1 1252 120 - 1 AUGUUGUCAAAUUCCAUUGUUUGGCAUCAUGAGCUCCGAUUCGGCGGAUCCCUUCUACUGGAUCCGUGUCAUUCUCGCCUCGAAUCGUGGCACACUUAUGGAGCUGGGCAUCUCGCCCAU (((.((((((((......)))))))).))).(((((((((...((((((((........)))))))))))......(((.((...)).)))........))))))((((.....)))).. ( -47.70) >DroGri_CAF1 1254 120 - 1 CUGCUGUCAGAUUCCAUUGUUCGGCAUCAUGAGCUCCGAUUCGGCGGAUCCCUUCUACUGGAUACGUGUGAUCCUCGCCUCGAAUCGUGGCACACUCAUGGAGUUGGGCAUCUCGCCCAU .(((((.(((......)))..)))))((((((((..((((((((((.((((........)))).)))(((.....)))..)))))))..))....))))))...(((((.....))))). ( -40.10) >DroWil_CAF1 1254 120 - 1 UUGCUGUCAAAUUCCCUUGUUUGGCAUUAUGAGCUCCGAUUCCGCCGAUCCCUUCUACUGGAUUCGUGUGAUUCUGGCCUCCAAUCGUGGUACCCUGAUGGAGCUGGGUAUCUCACCCAU ....((((((((......)))))))).....((((((((.(((((.(((((........))))).))).)).)).((...(((....)))...))....))))))((((.....)))).. ( -37.20) >DroMoj_CAF1 1255 120 - 1 GUGCUGUCAAAUCCCGUUGUUCGGCAUCAUGAGCUCCGAUUCAGCGGAUCCCUUCUACUGGAUACGUGUGAUACUGGCCUCGAAUCGUGGCACACUCAUGGAGCUGGGCAUUUCGCCCAU ((((((.(((......)))..))))))....((((((.((((((..((.....))..))))))....((((...(((((.((...)).))).)).))))))))))((((.....)))).. ( -41.00) >DroAna_CAF1 2441 120 - 1 CUGCUGCCAGAUCCCGCUCUUCGGUAUUAUGAGCUCAGACUCCGCCGAUCCCUUCUACUGGAUCCGUGUUAUUCUGGCCUCUAACCGUGGUACCCUCAUGGAGCUGGGUAUCUCGCCCAU .....((.((((((((((((..(((((((((((..((((...(((.(((((........))))).)))....))))..))).....)))))))).....))))).))).)))).)).... ( -41.50) >consensus CUGCUGUCAAAUCCCGUUGUUCGGCAUCAUGAGCUCCGAUUCGGCGGAUCCCUUCUACUGGAUCCGUGUGAUUCUGGCCUCGAAUCGUGGCACACUCAUGGAGCUGGGCAUCUCGCCCAU .((.((((.(((......))).)))).))..(((((((.....((((((((........)))))))).........(((.(.....).))).......)))))))((((.....)))).. (-32.17 = -31.73 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:41 2006