| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,475,194 – 6,475,303 |
| Length | 109 |
| Max. P | 0.539796 |
| Location | 6,475,194 – 6,475,303 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 75.96 |
| Mean single sequence MFE | -33.95 |
| Consensus MFE | -21.41 |
| Energy contribution | -22.67 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.539796 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6475194 109 + 22407834 CGACUUGGGCAGCUGGGCGUGGCGGCUGGAGUCCGUGGCCUUUAGGCGCUCACUUAGCGCCUUCAAGGCAAUUUGUCUAGGAUCGAA-GAAAAAAAAUCACA--AUGUAAAC (((((((((((((((((.(.((((.((((((.(....).)))))).))))).))))))(((.....)))....)))))))).)))..-..............--........ ( -39.90) >DroSim_CAF1 6294 111 + 1 CGACUUGGGCAGCUGGGCGUGGCGGCUGGAGUCCGUGGCCUUUAGGCGCUCACUUAGCGCCUUCAAGGCAAUUUGUCUAGGAUCGAA-GAAAAGUAUUCACACCAUGUAAAC (((((((((((((((((.(.((((.((((((.(....).)))))).))))).))))))(((.....)))....)))))))).)))..-........................ ( -39.90) >DroEre_CAF1 6699 109 + 1 CGAUUUGGGCAGCUGGGCGUGGCGGCUGGAGUCCGUGGCCUUUAGGCGCUCACUUAGCGCCUUUAAGGCAAUUUGUCUGAAAUUGAA-GAAAUGUAUUCAUA--AUGUAUAC (((((((((((((((((.(.((((.((((((.(....).)))))).))))).))))))(((.....)))....))))).))))))..-....(((((.....--..))))). ( -36.10) >DroYak_CAF1 6558 109 + 1 CGACUUGGGCAGCUGGGCAUGGCGGCUGGAGUCCGUGGCCUUGAGCCGCUCACUUAGCGCCUUUAGGGCAAUUUGUCUGAAAUCAAG-AAUAGGAAUUCAUA--AUGUAUUA .((.(..((((((((((...(((((((.(((.(....).))).)))))))..))))))(((.....)))....))))..)..))..(-(((....))))...--........ ( -37.60) >DroMoj_CAF1 6263 99 + 1 AGAUUUGGGCAGCUGCGUGUGACGUGUAGAGUCCGUUGCCUUAAGUCGCUCACUUAGAGCCUUUAGAGCGAUUUGUCUAGAUAUAAA-A-----UAUACAUAGAA------- ..((((((((.((.(((...(((.......)))))).))...(((((((((..............))))))))))))))))).....-.-----...........------- ( -24.34) >DroAna_CAF1 5376 112 + 1 AGACUUGGGAAGCUGAGAGUGCUUGGUGGAGUCCGUGGCCUUAAGCCGUUCACUCAGAGCCUUCAAUGCAAUUUGUCUAAAAAUAAAAUAAUGGCAAUUACAGAGUUUAUGC ((((((.(((((((..(((((..((((.(((.(....).)))..))))..)))))..)).))))........(((((...............)))))...).)))))).... ( -25.86) >consensus CGACUUGGGCAGCUGGGCGUGGCGGCUGGAGUCCGUGGCCUUUAGGCGCUCACUUAGCGCCUUCAAGGCAAUUUGUCUAAAAUCAAA_GAAAAGUAUUCACA__AUGUAUAC ...((((((((((((((.(.((((.((..((.(....).))..)).))))).))))))(((.....)))....))))))))............................... (-21.41 = -22.67 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:40 2006