Locus 2379

Sequence ID 2L_DroMel_CAF1
Location 6,464,577 – 6,464,675
Length 98
Max. P 0.521240
window3834

overview

Window 4

Location 6,464,577 – 6,464,675
Length 98
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 85.66
Mean single sequence MFE -34.10
Consensus MFE -31.28
Energy contribution -31.04
Covariance contribution -0.24
Combinations/Pair 1.21
Mean z-score -1.36
Structure conservation index 0.92
SVM decision value -0.02
SVM RNA-class probability 0.521240
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6464577 98 + 22407834
--------CUACUAUCUUGGCCGCUGCUGUUUUUGGAUGGGACCUUGUGCCAUGUGAGCGGCAGCAUAUAAAUCGCUUGCUUAGCCUGCAGGUCGCCAAAA--ACGUU
--------........(((((.((((((((((..(.((((.((...)).)))).))))))))))).........((((((.......)))))).)))))..--..... ( -34.80)
>DroSec_CAF1 8797 106 + 1
CAUUAGUACUACUAUCUUGGCCGCUACUGUUUUUGGAUGGGACCUUGUGCCAUGUGAGCGGUAGCAUAUAAAUCGCUUGCUUAGCCUGCAGGUCGCCAAAA--ACGUU
................(((((.((((((((((..(.((((.((...)).)))).))))))))))).........((((((.......)))))).)))))..--..... ( -32.80)
>DroSim_CAF1 11954 106 + 1
CAUUAGUACUACUAUCUUGGCCGCUGCUGUUUUUGGAUGGGACCUUGUGCCAUGUGAGCGGCAGCAUAUAAAUCGCUUGCUUAGCCUGCAGGUCGCCAAAA--ACGUU
................(((((.((((((((((..(.((((.((...)).)))).))))))))))).........((((((.......)))))).)))))..--..... ( -34.80)
>DroEre_CAF1 8778 100 + 1
--UAGGCCCUACUAUCUUGGCCGCUGCUGUCCGCGUUUGGGGCCUUGUGCCAUGUGAGCGGUAGCAUCUAAAUCGCUUGCUUAGCCUGCAGGUCGCCAGCA-G-----
--..((((..........))))(((((((..((((..(((.((...)).)))))))..))))))).........(((.((...(((....))).)).))).-.----- ( -35.70)
>DroYak_CAF1 8541 107 + 1
-GUUAGUGCUACUAUCUUGGCCGCUGCUGUCUGCGGAUGCAACCUUGUGCCAUGUAAGCGGUAGCAUUUAAAUCGCUUGCUUAGCCUGCAGGUCGCCAAAACGACGUU
-...............(((((.(((((((..((((...(((......)))..))))..))))))).........((((((.......)))))).)))))......... ( -32.40)
>consensus
__UUAGUACUACUAUCUUGGCCGCUGCUGUUUUUGGAUGGGACCUUGUGCCAUGUGAGCGGUAGCAUAUAAAUCGCUUGCUUAGCCUGCAGGUCGCCAAAA__ACGUU
................(((((.((((((((((..(.((((.((...)).)))).))))))))))).........((((((.......)))))).)))))......... (-31.28 = -31.04 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:39 2006