Locus 2376

Sequence ID 2L_DroMel_CAF1
Location 6,454,291 – 6,454,410
Length 119
Max. P 0.566407
window3831

overview

Window 1

Location 6,454,291 – 6,454,410
Length 119
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 82.10
Mean single sequence MFE -40.46
Consensus MFE -24.64
Energy contribution -25.72
Covariance contribution 1.08
Combinations/Pair 1.07
Mean z-score -1.82
Structure conservation index 0.61
SVM decision value 0.07
SVM RNA-class probability 0.566407
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6454291 119 - 22407834
GGACA-CCAGUGCCAACUACACAGUUUGCUAGCUGGGUCUGGGAAAAAUAUGGAUAUUGUAAGACAUGUCCAUGUGAGGUGAGGAGUCGCCACGUGUUGGAUGGCUCCCACCGCACACUG
((((.-(((((((.((((....)))).))..))))))))).........((((((((.(.....)))))))))(((.((((.((((((((((.....))).))))))))))).))).... ( -47.80)
>DroSec_CAF1 22604 119 - 1
GGACUCCCAGUGCCAACGACACAGUUUGCUGGCUGGGUCUGGGAAAAAUAUGGAUAUUGGAAGACAUGUCCAUGUC-GGUGAGGAGUCGCUACGUGUUGGAUGGCUCCCACCGCACACUA
.(((((((((.(((...(...(((....))).)..))))))))).....((((((((.(.....))))))))))))-((((.((((((((((.....))).)))))))))))........ ( -45.70)
>DroSim_CAF1 22689 119 - 1
GGACUCCCAGUGCCAACGACACAGUUUGCUGGCUGGGUCUGGGAAAAAUAUGGAUAUUGGAAGACAUGUCCAUGUC-GGUGAGGAGUCGCUACGUGUUGGAUGGCUCCCACCGCACACUA
.(((((((((.(((...(...(((....))).)..))))))))).....((((((((.(.....))))))))))))-((((.((((((((((.....))).)))))))))))........ ( -45.70)
>DroEre_CAF1 23553 101 - 1
------------------ACACAAUUGGUUGGCUUGCUCUGGGAAAAAUAUGGAUAUUGGAAAACAAGUCCAUGUC-CGCAAGGAGUCGCCACGUGGUGGAUGGCUCCCACCUCACACUG
------------------........(((.(((((((....(((....(((((((.(((.....))))))))))))-))))))((((((((((...)))).)))))))))))........ ( -31.10)
>DroYak_CAF1 23259 106 - 1
GGAGU-------------CCACAAUUUGUUGGCUUGCUCUGGUAAAAAUAUGGAUAUUGGAAGACAUGUCCCUGUC-AGCGAGGAGUCGCCACGUGUUGGAUGGCUCCCACCGCUCACUG
.((((-------------.......((((((((((((....))))......((((((.(.....)))))))..)))-)))))((((((((((.....))).)))))))....)))).... ( -32.00)
>consensus
GGACU_CCAGUGCCAAC_ACACAGUUUGCUGGCUGGGUCUGGGAAAAAUAUGGAUAUUGGAAGACAUGUCCAUGUC_GGUGAGGAGUCGCCACGUGUUGGAUGGCUCCCACCGCACACUG
.....................(((....)))((..............((((((((((.(.....)))))))))))..((((.((((((((((.....))).)))))))))))))...... (-24.64 = -25.72 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:36 2006