Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,454,182 – 6,454,285 |
Length | 103 |
Max. P | 0.990120 |
Location | 6,454,182 – 6,454,285 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 83.89 |
Mean single sequence MFE | -32.12 |
Consensus MFE | -24.32 |
Energy contribution | -25.60 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.17 |
Mean z-score | -2.84 |
Structure conservation index | 0.76 |
SVM decision value | 2.20 |
SVM RNA-class probability | 0.990120 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6454182 103 + 22407834 CAUAAUUCUAUCUA-----------GUGGUUGCGAGUCCUUGUUACUAGUGCAAAGGUCAUAAAUCGCUGUGUGGAUAUUCAUGAUGAUAUUCAUGUGGAUAUUCACACGUUGA .............(-----------((((((....(.((((((.......)).)))).)...)))))))((((((((((((((.(((.....)))))))))))))))))..... ( -30.40) >DroSec_CAF1 22495 103 + 1 CAUAAUUCUAUCUA-----------GUGGUUGCGAGUCCUUGAUGCUAGUGCAAAGGUCAUAAAUCGCUGUGUGGAUAUUCAUGAUGAUAUUCAUGUGGAUAUUCACACGUUGA .............(-----------((((((....(.((((..(((....))))))).)...)))))))((((((((((((((.(((.....)))))))))))))))))..... ( -32.80) >DroSim_CAF1 22580 103 + 1 CAUAAUUCUAUCUA-----------GUGGUUGCGAGUCCUUGAUGCGAGUGCAAAGGUCAUAAAUCGCUGUGUGGAUAUUCAUGAUGAUAUUCAUGUGGAUAUUCACACGUUGA .............(-----------((((((....(.((((..(((....))))))).)...)))))))((((((((((((((.(((.....)))))))))))))))))..... ( -31.90) >DroEre_CAF1 23444 103 + 1 CACAAAUCUAUCCU-----------GUGGGUGCGAGUCCUUGAUGCUAUUGCAAAGGUCGUAAUCCGGUGUAUGGAUAUUCAUGUGGAUAUUCGUGUGGAUAUUCACACGUUGA ..((((((((((((-----------(.(..(((((..((((..(((....))))))))))))..)))).).)))))).....(((((((((((....)))))))))))..))). ( -30.60) >DroYak_CAF1 23139 114 + 1 CACAAUUAUAUCCAUAAUUUUAAUGCUUUAUGCGAGUCCUUGUUGCUAUUGCCAAGGUCGUAAAUCGGAGUGUGGAUAAUCAUGUGGAUAUUCGUGUGAAUAUUCACAUGCUGA ........((((((((.(((..((......(((((..(((((..((....)))))))))))).))..)))))))))))..(((((((((((((....))))))))))))).... ( -34.90) >consensus CAUAAUUCUAUCUA___________GUGGUUGCGAGUCCUUGAUGCUAGUGCAAAGGUCAUAAAUCGCUGUGUGGAUAUUCAUGAUGAUAUUCAUGUGGAUAUUCACACGUUGA .........................((((((....(.((((...((....)).)))).)...)))))).((((((((((((((.(((.....)))))))))))))))))..... (-24.32 = -25.60 + 1.28)
Location | 6,454,182 – 6,454,285 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 83.89 |
Mean single sequence MFE | -22.56 |
Consensus MFE | -13.58 |
Energy contribution | -14.34 |
Covariance contribution | 0.76 |
Combinations/Pair | 1.12 |
Mean z-score | -2.09 |
Structure conservation index | 0.60 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.624014 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6454182 103 - 22407834 UCAACGUGUGAAUAUCCACAUGAAUAUCAUCAUGAAUAUCCACACAGCGAUUUAUGACCUUUGCACUAGUAACAAGGACUCGCAACCAC-----------UAGAUAGAAUUAUG .....(((((.((((...(((((......))))).)))).))))).((((.....(.(((((((....)))..)))).)))))......-----------.............. ( -18.90) >DroSec_CAF1 22495 103 - 1 UCAACGUGUGAAUAUCCACAUGAAUAUCAUCAUGAAUAUCCACACAGCGAUUUAUGACCUUUGCACUAGCAUCAAGGACUCGCAACCAC-----------UAGAUAGAAUUAUG .....(((((.((((...(((((......))))).)))).))))).((((((..(((....(((....))))))..)).))))......-----------.............. ( -21.20) >DroSim_CAF1 22580 103 - 1 UCAACGUGUGAAUAUCCACAUGAAUAUCAUCAUGAAUAUCCACACAGCGAUUUAUGACCUUUGCACUCGCAUCAAGGACUCGCAACCAC-----------UAGAUAGAAUUAUG .....(((((.((((...(((((......))))).)))).))))).((((((..(((....(((....))))))..)).))))......-----------.............. ( -21.20) >DroEre_CAF1 23444 103 - 1 UCAACGUGUGAAUAUCCACACGAAUAUCCACAUGAAUAUCCAUACACCGGAUUACGACCUUUGCAAUAGCAUCAAGGACUCGCACCCAC-----------AGGAUAGAUUUGUG ....((((((......))))))......((((....(((((......((.....)).(((((((....)))..))))............-----------.)))))....)))) ( -25.00) >DroYak_CAF1 23139 114 - 1 UCAGCAUGUGAAUAUUCACACGAAUAUCCACAUGAUUAUCCACACUCCGAUUUACGACCUUGGCAAUAGCAACAAGGACUCGCAUAAAGCAUUAAAAUUAUGGAUAUAAUUGUG ....((((((.((((((....)))))).))))))..((((((...............(((((((....))..)))))....((.....))..........))))))........ ( -26.50) >consensus UCAACGUGUGAAUAUCCACAUGAAUAUCAUCAUGAAUAUCCACACAGCGAUUUAUGACCUUUGCACUAGCAUCAAGGACUCGCAACCAC___________UAGAUAGAAUUAUG ....((((((......))))))..((((..(((((((............))))))).(((((((....)))..)))).........................))))........ (-13.58 = -14.34 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:35 2006