Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,412,988 – 6,413,083 |
Length | 95 |
Max. P | 0.888635 |
Location | 6,412,988 – 6,413,083 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 91.10 |
Mean single sequence MFE | -31.45 |
Consensus MFE | -23.75 |
Energy contribution | -23.94 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.08 |
Mean z-score | -2.75 |
Structure conservation index | 0.76 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888635 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6412988 95 + 22407834 AACGGCCGCUGGUUGCCACAAAACAAUGUGCCACAGGC-GGGCUUCCCGCCCAAGUGGGUGCUUACUGCAACCAAAUACGUAAACAGUAAAUACUA .(((.....(((((((((((......))))((((.(((-(((...))))))...)))).........)))))))....)))............... ( -31.20) >DroSec_CAF1 41227 92 + 1 AACGCCCGCUGGUUGCCACAAAACAAUGUGCCACGGGCAGGGCUUC----CCAAGUGGGUGGUUACUGCAACCAAAUCCGUAAACAGUAAACACUA ..((((((((((..((((((......)))(((...)))..)))...----)).)))))))).((((((..((.......))...))))))...... ( -27.80) >DroSim_CAF1 41725 95 + 1 AACGCCCGCUGGUUGCCACAAAACAAUGUGCCACGGGC-GGGCUUCCCGCCCAAGUGGGUAGUUACUGCAACCAAAUCCGAAAACAGUAAACACUA ...(((((((.((.((.(((......))))).))((((-(((...))))))).)))))))..((((((................))))))...... ( -33.69) >DroYak_CAF1 49567 95 + 1 AACGCCCGCUGGUUGCCACAAAACAAUGUGCCACAGGC-GGGCUUCUCGCCCAAGUGGGUGGUUACUGCAACUAGAUCUGUAAACAGUAAACACCA ...(((((((.((.((.(((......))))).)).)))-))))...((((((....))))))((((((..((.......))...))))))...... ( -33.10) >consensus AACGCCCGCUGGUUGCCACAAAACAAUGUGCCACAGGC_GGGCUUCCCGCCCAAGUGGGUGGUUACUGCAACCAAAUCCGUAAACAGUAAACACUA ...(((((((.((.((.(((......))))).)).))).))))..............((((.((((((................)))))).)))). (-23.75 = -23.94 + 0.19)
Location | 6,412,988 – 6,413,083 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 91.10 |
Mean single sequence MFE | -34.28 |
Consensus MFE | -26.39 |
Energy contribution | -27.08 |
Covariance contribution | 0.69 |
Combinations/Pair | 1.11 |
Mean z-score | -2.03 |
Structure conservation index | 0.77 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.776503 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6412988 95 - 22407834 UAGUAUUUACUGUUUACGUAUUUGGUUGCAGUAAGCACCCACUUGGGCGGGAAGCCC-GCCUGUGGCACAUUGUUUUGUGGCAACCAGCGGCCGUU ((((....))))....(((...(((((((.........((((..(((((((...)))-))))))))((((......))))))))))))))...... ( -34.60) >DroSec_CAF1 41227 92 - 1 UAGUGUUUACUGUUUACGGAUUUGGUUGCAGUAACCACCCACUUGG----GAAGCCCUGCCCGUGGCACAUUGUUUUGUGGCAACCAGCGGGCGUU ...((.(((((((..((.......)).))))))).))(((....))----)..((((.((...((.((((......)))).))....))))))... ( -29.80) >DroSim_CAF1 41725 95 - 1 UAGUGUUUACUGUUUUCGGAUUUGGUUGCAGUAACUACCCACUUGGGCGGGAAGCCC-GCCCGUGGCACAUUGUUUUGUGGCAACCAGCGGGCGUU ....((((.(((....)))..((((((((.........((((..(((((((...)))-))))))))((((......)))))))))))).))))... ( -36.40) >DroYak_CAF1 49567 95 - 1 UGGUGUUUACUGUUUACAGAUCUAGUUGCAGUAACCACCCACUUGGGCGAGAAGCCC-GCCUGUGGCACAUUGUUUUGUGGCAACCAGCGGGCGUU .((((.(((((((..((.......)).))))))).)))).....((((.....))))-((((((((((((......))))....))).)))))... ( -36.30) >consensus UAGUGUUUACUGUUUACGGAUUUGGUUGCAGUAACCACCCACUUGGGCGGGAAGCCC_GCCCGUGGCACAUUGUUUUGUGGCAACCAGCGGGCGUU ..(((.(((((((...((....))...))))))).)))......((((.....)))).((((((((((((......))))....))).)))))... (-26.39 = -27.08 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:24 2006