Locus 2368

Sequence ID 2L_DroMel_CAF1
Location 6,412,701 – 6,412,806
Length 105
Max. P 0.668411
window3816

overview

Window 6

Location 6,412,701 – 6,412,806
Length 105
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 84.57
Mean single sequence MFE -29.21
Consensus MFE -22.47
Energy contribution -23.67
Covariance contribution 1.20
Combinations/Pair 1.06
Mean z-score -2.08
Structure conservation index 0.77
SVM decision value 0.29
SVM RNA-class probability 0.668411
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6412701 105 + 22407834
CCAUGGGUUCAUGCCUUGGCAGCUGUGCCACAGCUGCCGCCGCACCAGCCCACUCCGCCUGCACC---------UCAACGUCCGACUCCACCACCCACUCGACUUCCUCGACGU
...((((((..(((..(((((((((.....)))))))))..)))..)))))).............---------...(((((.((......................))))))) ( -32.25)
>DroSec_CAF1 40940 105 + 1
CCAUGGGUUCAUGCCUUGGCAGCUGUGCCACAGCUGCCGCCGCACCCCCCCACUCCGCCUGCACC---------UCAACGUCCGACUCCACCACCCACUCGACUUCCUCGACGU
...((((....(((..(((((((((.....)))))))))..)))....)))).............---------...(((((.((......................))))))) ( -28.65)
>DroSim_CAF1 41438 105 + 1
CCAUGGGUUCAUGCCUUGGCAGCUGUGCCACAGCUGCCGCCGCACCCGCCCACUCCGCCUGCACC---------UCAACGUCCGACUCCACCACCCACUCGACUUCCUCGACCU
...(((((...(((..(((((((((.....)))))))))..)))...))))).............---------........................((((.....))))... ( -29.80)
>DroEre_CAF1 39565 105 + 1
CCAUGGGUUCAUGCCUUGGCAGCUGUGCCACAGCUGCCGCCGCACCCGCCCACUCCGCCUGCACC---------UCAACAUCCGACUCCACCACCCACUCGACGUCCUCGACGU
...(((((...(((..(((((((((.....)))))))))..)))...))))).............---------...........................(((((...))))) ( -31.30)
>DroYak_CAF1 49280 105 + 1
UCAUGGGUUCAUGCCUUGGCAGCUGUGCCCCAGCUGCCGCCGCACCCGCCCACUCUGCCUGCACC---------UCAACGUCCGACUCCACCACCCACUCGACAUCCUCGACGU
...(((((...(((..(((((((((.....)))))))))..)))...))))).............---------...(((((.((......................))))))) ( -29.85)
>DroAna_CAF1 35735 96 + 1
GCAUGGGUUCAUGCCUUGGCAACUGCGCCACAUCCGCCGCCA---CCGCCUCCUUCGCAAGCUCCCAGCCUCGUUCAACCUCCGACUCC---------------UCCGCGGCGU
(((((....)))))..((((......))))....((((((..---..((.......))..((.....))....................---------------...)))))). ( -23.40)
>consensus
CCAUGGGUUCAUGCCUUGGCAGCUGUGCCACAGCUGCCGCCGCACCCGCCCACUCCGCCUGCACC_________UCAACGUCCGACUCCACCACCCACUCGACUUCCUCGACGU
...(((((...(((..(((((((((.....)))))))))..)))...))))).............................................................. (-22.47 = -23.67 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:22 2006