Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,412,191 – 6,412,295 |
Length | 104 |
Max. P | 0.533658 |
Location | 6,412,191 – 6,412,295 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 90.94 |
Mean single sequence MFE | -28.27 |
Consensus MFE | -23.42 |
Energy contribution | -24.42 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.30 |
Structure conservation index | 0.83 |
SVM decision value | 0.00 |
SVM RNA-class probability | 0.533658 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6412191 104 - 22407834 UGCGCUGUCAAGUGGCUA-AAGUCAACAGGAGAGCAAAGCGUCUUGUGACAGGAGCUUUCGUCACUACUUAAAGCUUAGACGGACGCUCAAAGUUAAUAAAUUCA ....(((((...((((..-..))))((((((..((...)).)))))))))))((((.((((((...............)))))).))))................ ( -28.96) >DroSec_CAF1 40433 103 - 1 UGCGCUGUCAAGUUCCUA-AAGUCAACAGGAGAGCAAAACGUCUUGUGACAGGAGCUUUCGUCACUAAUUAAAGCUUCGACGGACGCUCAAAGUUAAUGCAUUC- .((((((((.........-..((((.(((((..(.....).))))))))).((((((((.((.....)).))))))))))))).))).................- ( -28.60) >DroSim_CAF1 40931 103 - 1 UGCGCUGUCAAGUUGCUA-AAGUCAACAGGAGAGCAAAGCGUCUUGUGACAGGAGCUUUCGCCACUACUUAAAGCUUCGACGGACGCUCAAAGUUAAUGAAUUC- .((((((((.........-..((((.(((((..((...)).))))))))).((((((((...........))))))))))))).))).................- ( -29.90) >DroEre_CAF1 39051 102 - 1 UGCGCUGUCAAGUUGCCA-AAGUCAACAGGAAAGGAAAGCGUCUUGUGACAGCAGCUUUCGUCACCACUUAAAGCUU-AACGGACGCUCAAAGUUAAUGACUUU- .(((((((.(((((....-((((.....((..(.(((((((((....)))....)))))).)..))))))..)))))-.)))).)))..((((((...))))))- ( -24.80) >DroYak_CAF1 48757 104 - 1 CGCGCUGUCAAGUUGCCAAAAGUCAACAGGAGAGGAAAGCGUCUUGUGACAGGAGCUUUCGUCACCACUUAAAGCUUCAACGGGCGCUCAAAGUUAAUGAUUUC- .(((((.....((((.(....).)))).((.((.((((((.(((((...))))))))))).)).))................))))).................- ( -29.10) >consensus UGCGCUGUCAAGUUGCUA_AAGUCAACAGGAGAGCAAAGCGUCUUGUGACAGGAGCUUUCGUCACUACUUAAAGCUUCGACGGACGCUCAAAGUUAAUGAAUUC_ .((((((((............((((.(((((..(.....).))))))))).((((((((...........))))))))))))).))).................. (-23.42 = -24.42 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:21 2006