Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,409,729 – 6,409,842 |
Length | 113 |
Max. P | 0.957793 |
Location | 6,409,729 – 6,409,842 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 94.60 |
Mean single sequence MFE | -37.56 |
Consensus MFE | -32.88 |
Energy contribution | -34.16 |
Covariance contribution | 1.28 |
Combinations/Pair | 1.06 |
Mean z-score | -1.68 |
Structure conservation index | 0.88 |
SVM decision value | 1.48 |
SVM RNA-class probability | 0.957793 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6409729 113 - 22407834 AGGAGACGGAAAGACAGAGCAGAAGUCAGACCGGCGGAGCAUUCACCGCUGGCUCCUUUUCAUCAUGCGGCUACAUCACUUCGAAGAUGUGGGAAAUAUCCUUUCUGUCUGCG .(.((((((((((.....(((((((..((.(((((((........)))))))))...))))....)))..(((((((........)))))))........)))))))))).). ( -41.80) >DroSec_CAF1 38013 113 - 1 AGGAGACGGAAAGACAGAGCAGAAGUCAGACCGGCGGAGCAUUCACCGCUGGCUCCUUUUCAUCAUGCAGCAACAUCACUUCGAAGAUGUGGGAAAUAUCCUUUCUGUCUGCG .(.((((((((((.....(((((((..((.(((((((........)))))))))...))))....)))....(((((........)))))..........)))))))))).). ( -37.70) >DroSim_CAF1 38494 113 - 1 AGGAGACGGAAAGACAGAGCAGAAGUCAGACUGGCGGAGCAUUCACCGCUGGCUCCUUUUCAUCAUGCGGCAACAUCACUUCGAAGAUGUGGGAAAUAUCCUUUCUGUCUGCG .(.((((((((((........(((((..(((..((((........))))..).)).............(....)...)))))...(((((.....))))))))))))))).). ( -35.60) >DroEre_CAF1 36594 112 - 1 AGGAGACGGAAAGACAGAGCAGAAGUCAGACCGGCG-AGCAUUCACCGCUGGCUCCUUUUCAUCAGGCGGCUACACCACUUCGAAGAUGUGCGAAAUAUCCUUUCUGUCUGCG .(.((((((((((...(((.((.((((((..(((.(-......).))))))))).)).))).(((((.((.....)).))).)).(((((.....))))))))))))))).). ( -36.20) >DroYak_CAF1 42015 112 - 1 AGGAGACGGAAAGACUGAACAGAAGUCAGACCGGCG-AGCAUUCACCGCUGCUUCCUUUUCAACACGCAGCUACAUCACUCCGAAGAUGUGGGAAAUAUCCUUUCUGUCUGCG .(.((((((((((..((((..((((.(((..(((.(-......).))))))))))...))))........(((((((........)))))))........)))))))))).). ( -36.50) >consensus AGGAGACGGAAAGACAGAGCAGAAGUCAGACCGGCGGAGCAUUCACCGCUGGCUCCUUUUCAUCAUGCGGCUACAUCACUUCGAAGAUGUGGGAAAUAUCCUUUCUGUCUGCG .(.((((((((((...((..(((((..((.(((((((........))))))))).)))))..))......(((((((........)))))))........)))))))))).). (-32.88 = -34.16 + 1.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:15 2006