Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 684,227 – 684,318 |
Length | 91 |
Max. P | 0.938355 |
Location | 684,227 – 684,318 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 71.59 |
Mean single sequence MFE | -31.73 |
Consensus MFE | -19.05 |
Energy contribution | -18.83 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.24 |
Mean z-score | -1.73 |
Structure conservation index | 0.60 |
SVM decision value | 1.29 |
SVM RNA-class probability | 0.938355 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 684227 91 - 22407834 GUUGCU----------GUUGAUGGCGUUGCAUGGUCAGCGUUUGAUUUGUUGCGCGCACGCCUUGGCAACAUUGUUGCCACA-GA-AGAGCAAAAGAA------CCCAG .(((((----------.((...(((((.((.((..(((((.......))))))).))))))).(((((((...)))))))..-.)-).))))).....------..... ( -28.30) >DroPse_CAF1 90745 100 - 1 --UGUUCGUUUGCCGCGCGAUUGGCGUUGCAUGAACAGCAUUUGAUUUGUGGCGCGCACGCCCUGGCAACAUUGUUGCUAGA-UC-AGAGCAACCGAGAGUGUC----- --((((((..(((.((((.....)))).)))))))))((.((((((....((((....))))((((((((...)))))))))-))-))))).(((....).)).----- ( -35.80) >DroEre_CAF1 81396 91 - 1 --UGUU----------GUUGAUGGCGUUGCAUGGUCAGCGUUUGAUUUGUUGCGCGCACGCC-UGGCAACAUUGUUGCCACA-GAAAGAGCA----AGAGCAACAGCAU --((((----------((((..(((((.((.((..(((((.......))))))).)))))))-(((((((...)))))))..-.........----....)))))))). ( -31.20) >DroWil_CAF1 44877 81 - 1 --UGUU----------GUUGAUGCUAUUGCAUGGUCAACAUUUGAUUUGUUGCGCGCACGCCUUGGCAACAUUGUUGCUAGCAAC-AUUGCACC--------------- --((((----------(.(.((((....)))).).)))))..((...((((((((....))..(((((((...))))))))))))-)...))..--------------- ( -26.50) >DroYak_CAF1 77418 92 - 1 --UGUU----------GUUGAUGGCGUUGCAUGGUCAGCGUUUGAUUUGUUGCGCGCACGCCUUGGCAACAUUGUUGCCACA-GAAAGAGCG----AGAGCAACAGCAU --((((----------((((...((((.(((.((((((...))))))...))))))).((((((((((((...)))))))..-...)).)))----....)))))))). ( -32.80) >DroPer_CAF1 92662 100 - 1 --UGUUCGUUUGCCGCGCGAUUGGCGUUGCAUGAACAGCAUUUGAUUUGUGGCGCGCACGCCCUGGCAACAUUGUUGCUAGA-UC-AGAGCAACCGAGAGUGUC----- --((((((..(((.((((.....)))).)))))))))((.((((((....((((....))))((((((((...)))))))))-))-))))).(((....).)).----- ( -35.80) >consensus __UGUU__________GUUGAUGGCGUUGCAUGGUCAGCAUUUGAUUUGUUGCGCGCACGCCUUGGCAACAUUGUUGCCACA_GA_AGAGCAAC__AGAG___C_____ ..((((................(((((.((.((..(((((.......))))))).))))))).(((((((...)))))))........))))................. (-19.05 = -18.83 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:48 2006