Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,395,466 – 6,395,566 |
Length | 100 |
Max. P | 0.986030 |
Location | 6,395,466 – 6,395,566 |
---|---|
Length | 100 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 73.43 |
Mean single sequence MFE | -34.44 |
Consensus MFE | -17.55 |
Energy contribution | -18.30 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.13 |
Mean z-score | -2.56 |
Structure conservation index | 0.51 |
SVM decision value | 2.03 |
SVM RNA-class probability | 0.986030 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6395466 100 + 22407834 -GGAGCCAUGAUGCUGCAGCUUCAGCUGGA------GCUGAAGCAGGAGCAAGAGUUGAAUCCUUAGAGCCCUGGCAGCAUCUGAUAAACAACGAGCAGUGGCAACA -(..(((((((((((((.((((((((....------))))))))(((.((..(((.......)))...))))).))))))))((.....)).......)))))..). ( -39.70) >DroSec_CAF1 23852 79 + 1 -GGAGCCAUGAUGCUGCAGCUUCAGCUG------------G------AGCAGGAGUUGAAUCCUUUGA---------GCAUCAGAUAAACAACGAGCAGUGGCAACA -(..(((.(((((((.(((((((....)------------)------)))((((......)))).)))---------))))))........((.....)))))..). ( -25.30) >DroSim_CAF1 24029 85 + 1 -GGAGCCAUGAUGCUGCAGCUUCAGCUGGA------GCUGG------AGCAGGAGUUGAAUCCUUGGA---------GCAUCAGAUAAACAACGAGCAGUGGCAACA -(..(((.(((((((.((((((((((....------)))))------)))((((......)))))).)---------))))))........((.....)))))..). ( -35.20) >DroEre_CAF1 21910 104 + 1 CGGUACCAUGGAGCUGCAGCUUCGGCUGGAUCAGGAGCGGGAGCGGGAGCGGGAGCUGCAGGCUGGGAGCCCUGGCAGCAUCAGAUAAACAACGGGCAGUGGCA--- .....((.(((..((((((((((.(((...((....((....)).))))).)))))))))).))))).((((((.(..................).))).))).--- ( -37.57) >consensus _GGAGCCAUGAUGCUGCAGCUUCAGCUGGA______GCUGG______AGCAGGAGUUGAAUCCUUGGA_________GCAUCAGAUAAACAACGAGCAGUGGCAACA ....(((((...(((.(((((((.(((....................))).))))))).....(((((............))))).........))).))))).... (-17.55 = -18.30 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:08 2006