Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,390,800 – 6,390,892 |
Length | 92 |
Max. P | 0.862884 |
Location | 6,390,800 – 6,390,892 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 80.70 |
Mean single sequence MFE | -29.53 |
Consensus MFE | -16.64 |
Energy contribution | -16.92 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.09 |
Mean z-score | -2.58 |
Structure conservation index | 0.56 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.862884 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6390800 92 - 22407834 GGAAGUGCUGGAAUUUGGGAACAAGUUCCGCCUUUCAAGUUGACAAAUCAACAUCAUCCGGCU-----ACCGAACGGCACUGGC---------ACA-----CAUCCACAUC (((.(((((((((((((....))))))))(((.(((..(((((....))))).......((..-----.))))).)))...)))---------)).-----..)))..... ( -33.10) >DroSec_CAF1 19136 91 - 1 GGAAGUGCUGGAAUUUGGGAACAAGUUCCGCCUUUCAAGUUGACAAAUCAACAUCAUCCGGCU-----ACCGAACGGCACUGGC---------ACA------GUCCACAUC (((.(((((((((((((....))))))))(((.(((..(((((....))))).......((..-----.))))).)))...)))---------)).------.)))..... ( -34.10) >DroSim_CAF1 19313 91 - 1 GGAAGUGCUGGAAUUUGGGAACAAGUUCCGCCUUUCAAGUUGACAAAUCAACAUCAUCCGGCU-----ACCGAACGGCACUGGC---------ACA------GUCCACAUC (((.(((((((((((((....))))))))(((.(((..(((((....))))).......((..-----.))))).)))...)))---------)).------.)))..... ( -34.10) >DroEre_CAF1 17231 103 - 1 GGAAGUGCUGGAAUUUUCGAACAAGUUCCGCCUUUCAAGCUGACAAAUCAACAUCAUCCGGCU-----ACCGAACGGCACUGGCACUGG---CACAGUCCACGUCCACAUC ((((((((((((((((......)))))))(((.(((.(((((................)))))-----...))).)))...))))))((---......))...)))..... ( -28.49) >DroYak_CAF1 22448 103 - 1 GGAAGUGCUGGAAUUUUUGAACAAGUUCCGCCUUUCAAGUUGACAAAUCAACAUCAUCCGGCU-----ACUGAACGCCACUGGCACUGG---CACAGUCCACGUCCACGUU (((.((((((((((((......)))))))(((......(((((....))))).......(((.-----.......)))...)))...))---)))..)))(((....))). ( -31.10) >DroPer_CAF1 27094 97 - 1 GGAAAUGCAAGAAUUUUCGAACAAGAUCCGCUUUUCAAGUUGACAAAUCAACAUCAUCCGGUGGACAAACAGAACGA--CGGGAACGAACAGAACA------GU------U ((((((......))))))...........(((.(((..(((((....)))))....(((.((.(..........).)--).))).......))).)------))------. ( -16.30) >consensus GGAAGUGCUGGAAUUUGGGAACAAGUUCCGCCUUUCAAGUUGACAAAUCAACAUCAUCCGGCU_____ACCGAACGGCACUGGC_________ACA______GUCCACAUC (((((.((.(((((((......))))))))))))))..(((((....)))))......(((........)))....................................... (-16.64 = -16.92 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:07 2006