Locus 2356

Sequence ID 2L_DroMel_CAF1
Location 6,379,448 – 6,379,553
Length 105
Max. P 0.522159
window3798

overview

Window 8

Location 6,379,448 – 6,379,553
Length 105
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 82.31
Mean single sequence MFE -17.88
Consensus MFE -11.58
Energy contribution -12.42
Covariance contribution 0.84
Combinations/Pair 1.05
Mean z-score -1.67
Structure conservation index 0.65
SVM decision value -0.02
SVM RNA-class probability 0.522159
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6379448 105 - 22407834
CAGUUAAUUUAAGUUGUUUAUGGAUUGUUUCCGAUUGAGCAAUCCACUUUUGUUCGGUACCGUUUUUUGGCGCAGACAUCACGCUCUUACCCCUUAUUUUAAUUA
.((((((..((((.......((((((((((......))))))))))....((((..(..(((.....)))..).))))..............))))..)))))). ( -22.40)
>DroSec_CAF1 7879 94 - 1
CUGUUAAUUUAAGUUGUUUAUGGAUUGUUUCCGAUUGAGCAAUCCACUUUUGUUCGGUACCGUUUUUUU-C----------CGCUCUUACCCCUUACUUUAAUUA
..(((((..((((.......((((((((((......)))))))))).........((((..((......-.----------.))...)))).))))..))))).. ( -16.60)
>DroSim_CAF1 7956 95 - 1
CUGUUCAUUUAAGUUGUUUAUGGAUUGUUUCCGAUUGAGCAAUCCACUUUUGUUCGGUACCGUUUUUUUGC----------CGCUCUUACCCCUUACUUUAAUUA
.........((((.......((((((((((......)))))))))).....(..(((((.........)))----------))..)......))))......... ( -15.90)
>DroEre_CAF1 6007 82 - 1
CUGUUAAUUUAAGUUGUUUAUGGAUUGUUUCCGAUUGAGCAAUCCACUUUUGUCCGGGAGCUUUU-----------------------ACCCCAUAUUUUAAUUA
..(((((..((.........((((((((((......)))))))))).........(((.(.....-----------------------.)))).))..))))).. ( -16.00)
>DroYak_CAF1 11037 95 - 1
CAGUUAAUUUAAGUUGUUUAUGGAUUGUUUCCGCUUCAGCAAUCCACUUUUAUCCGGGAUCGUUUUUUGCC----------CAGACUAACCCUUUAUUUGAAUUA
....((((((((((......(((((((((........))))))))).........(((...((((......----------.))))...)))...)))))))))) ( -18.50)
>consensus
CUGUUAAUUUAAGUUGUUUAUGGAUUGUUUCCGAUUGAGCAAUCCACUUUUGUUCGGUACCGUUUUUUG_C__________CGCUCUUACCCCUUAUUUUAAUUA
..(((((..((((.......((((((((((......))))))))))........((....))..............................))))..))))).. (-11.58 = -12.42 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:05 2006