Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,379,070 – 6,379,175 |
Length | 105 |
Max. P | 0.949405 |
Location | 6,379,070 – 6,379,175 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 76.26 |
Mean single sequence MFE | -22.35 |
Consensus MFE | -14.04 |
Energy contribution | -14.67 |
Covariance contribution | 0.63 |
Combinations/Pair | 1.12 |
Mean z-score | -1.97 |
Structure conservation index | 0.63 |
SVM decision value | 1.39 |
SVM RNA-class probability | 0.949405 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6379070 105 + 22407834 -CAACA-UCAACAUCC----U-AU-----GCAUUUUUUGGGCACUACUCACAUUUGCCGGACGCAAUCACCGAAUUUGUGGGUCCUUCGCCCACAAUGCCAAUGCCAUUGCCAUUCA -.....-.........----.-..-----(((((...(((((...(((((((..(..(((.........))).)..))))))).....))))).))))).................. ( -22.90) >DroVir_CAF1 13873 89 + 1 ACAAAACUGUACAGCC----AAAA-----GCUUUU-----G--CUACUCACAUUUGUCAAUCACAAUCACCGAAUUCGUCGGCACAUCCCCACCG------------AAGCCAUUGA ...............(----((..-----(((((.-----.--..........((((.....))))...((((.....))))............)------------))))..))). ( -9.20) >DroSec_CAF1 7496 102 + 1 -CAACA-UCAACAUCC----U-AU-----GCAU---UUGGGCACUACUCACAUUUGCCGGACGCAAUCACCGAAUUUGUGGGUCCUUCGCCCACAAUGCCAAUGCCAUUGCCAUUCA -.....-.........----.-..-----((((---((((((...(((((((..(..(((.........))).)..))))))).....))))).))))).................. ( -24.10) >DroSim_CAF1 7574 102 + 1 -CAACA-UCAACAUCC----U-AU-----GCAU---UUGGGCACUACUCACAUUUGCCGGACGCAAUCACCGAAUUUGUGGGUCCUUCGCCCACAAUGCCAAUGCCAUUGCCAUUCA -.....-.........----.-..-----((((---((((((...(((((((..(..(((.........))).)..))))))).....))))).))))).................. ( -24.10) >DroEre_CAF1 5623 111 + 1 -AUGCA-UCAACCUCCUCUGC-AUCCUCUGCAUUG---GGGCACUACUCACAUUUGCCGGACGCAAUCACCGAAUUGGUGGGUCCUUCGCCCACAAUGCCAAUGCCAAUCCCAUUCA -.....-............((-((.....((((((---((((....(........)..((((....(((((.....)))))))))...)))).))))))..))))............ ( -26.70) >DroYak_CAF1 10587 104 + 1 -AAACA-UCAACAUCC----C-AUUCCCAGCAUUCGCUGGGCACUACUCACAUUUGCCGGACGCAAUCACCGAAUUUGUGGGUCCUUCGCCCACAAUGCCAAUGC------CAUUCA -.....-.........----.-...((((((....)))))).........((((.(((((.........)))...((((((((.....)))))))).)).)))).------...... ( -27.10) >consensus _CAACA_UCAACAUCC____U_AU_____GCAUU__UUGGGCACUACUCACAUUUGCCGGACGCAAUCACCGAAUUUGUGGGUCCUUCGCCCACAAUGCCAAUGCCAUUGCCAUUCA .......................................((((..........((((.....)))).........((((((((.....))))))))))))................. (-14.04 = -14.67 + 0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:04 2006