| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,375,502 – 6,375,599 |
| Length | 97 |
| Max. P | 0.878828 |
| Location | 6,375,502 – 6,375,599 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 73.58 |
| Mean single sequence MFE | -35.30 |
| Consensus MFE | -17.82 |
| Energy contribution | -18.24 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.91 |
| SVM RNA-class probability | 0.878828 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6375502 97 - 22407834 UAGCACCGGACUUCUUCUUGGCCGCUCCUGAUAGCGGAGGCUUGUAAUCUGAAUCGGAGUCCGUUGAGGUUAUU------GCAGUGGCCUCGACAAUGGAGUU .(((.(((((((((.......(((((......))))).(..((.......))..))))))))(((((((((((.------...)))))))))))...)).))) ( -35.50) >DroPse_CAF1 6816 97 - 1 -G-----GAUCUUCUUUUUGGUGGGCACUGCUAUUGCUGGCUUGUAAUCCGAAUCCGAGUCCGUGGAGGUAAUGGCAUUGGCAGUGGCCUCCACAAUGGAGUU -.-----...((((.((.(((.((.((((((((.((((.((((.((..(((....)).)....)).))))...)))).)))))))).)).))).)).)))).. ( -35.70) >DroWil_CAF1 7146 103 - 1 UAUUAAUGGGCUUCUUCUUGUUGGCCACUACCAGAUUGGAUUUGUAAUCUGAAUCAGAAUCGGUAGAGGUAAUGGCAUUGGCUGUGGCCUCCACAAUGGAGUU ........((((((...((((.((((.(((((.((((.(((((.......)))))..))))))))).....(((((....)))))))))...)))).)))))) ( -30.00) >DroYak_CAF1 5360 97 - 1 UGGAUCCGGACUUCUUUUUGCCUGCUGCUGCAAGCGGCGGCUUGUAAUCGGAAUCGGAGUCCGUUGACGUUAUG------GCCGUGGCCUCGACAAUGGAGUU ....(((((..((((..((((..(((((((....)))))))..))))..))))))))).(((((((.((....(------((....))).)).)))))))... ( -40.30) >DroAna_CAF1 1977 100 - 1 UGUUAGCUGGCUUCUUUUUGCUAGCCACUGCU---GUGGGCUUGUAAUCGGAGUCGGAGUCGGUGGAUGUGAUGGCGUUGGCAGUAGCCUCCACAAUGGAGUU .((((.((((((((...((((.((((((....---)).)))).))))..)))))))).....((.(((((....))))).))..))))((((.....)))).. ( -32.30) >DroPer_CAF1 6913 97 - 1 -G-----GAUCUUCUUUUUGGUGGGCACUGCCAUUGCUGGCUUGUAAUCCGAAUCCGAGUCCGUGGAGGUAAUGGCAUUGGCAGUGGCCUCCACAAUGGAGUU -.-----...((((.((.(((.((.((((((((.((((.((((.((..(((....)).)....)).))))...)))).)))))))).)).))).)).)))).. ( -38.00) >consensus UG__A_CGGACUUCUUUUUGGUGGCCACUGCUAGCGCGGGCUUGUAAUCCGAAUCGGAGUCCGUGGAGGUAAUGGCAUUGGCAGUGGCCUCCACAAUGGAGUU ........((((((........................(((((.............))))).(((((((..((.((....)).))..)))))))...)))))) (-17.82 = -18.24 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:03 2006