| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,372,439 – 6,372,534 |
| Length | 95 |
| Max. P | 0.951997 |
| Location | 6,372,439 – 6,372,534 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 89.49 |
| Mean single sequence MFE | -16.73 |
| Consensus MFE | -14.64 |
| Energy contribution | -14.53 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.79 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.42 |
| SVM RNA-class probability | 0.951997 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6372439 95 - 22407834 AGUAUUUAACA----CGCACAACUUCAUAAACAAAUUACAAAUUAAUUUUGUAAACAAAAGACCGCGAAAAAGCGUGGUUAUUUGCGCCAAAUAACAUA ...........----.((.................(((((((.....))))))).((((.(((((((......))))))).)))).))........... ( -18.40) >DroSec_CAF1 964 99 - 1 GGUAUAUAACACACACACACAAAUUCUUAAACAAAUUACAAAUUAAUUUUGUAAACACAAGACCAUGAUAAAGCGUGGUUAUUUGCGCCAAAUAAAAUA (((................................(((((((.....)))))))......(((((((......)))))))......))).......... ( -15.90) >DroSim_CAF1 940 97 - 1 GGUAUUUAACAAA--CACACAAAUUCUUAAACAAAUUACAAAUUAGUUUUGUAAACACAAGACCAUGAUAAAGCGUGGUUAUUUGCGCCAAAUAAAAUA (((..........--....................(((((((.....)))))))......(((((((......)))))))......))).......... ( -15.90) >consensus GGUAUUUAACA_A__CACACAAAUUCUUAAACAAAUUACAAAUUAAUUUUGUAAACACAAGACCAUGAUAAAGCGUGGUUAUUUGCGCCAAAUAAAAUA (((................................(((((((.....)))))))......(((((((......)))))))......))).......... (-14.64 = -14.53 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:02 2006