Locus 2352

Sequence ID 2L_DroMel_CAF1
Location 6,372,289 – 6,372,405
Length 116
Max. P 0.830404
window3794

overview

Window 4

Location 6,372,289 – 6,372,405
Length 116
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 88.38
Mean single sequence MFE -23.71
Consensus MFE -20.84
Energy contribution -21.78
Covariance contribution 0.94
Combinations/Pair 1.08
Mean z-score -1.70
Structure conservation index 0.88
SVM decision value 0.71
SVM RNA-class probability 0.830404
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6372289 116 - 22407834
GCUUUACGGAAUAUCACAGCUGAUAAUAAAGCCAAUCACCACGAAUUAAGAAUCAGCUGAUUGAAUCAGCAUCAAAGCUCAGUGCUUUUUAAACCGUAAACUA---AUCUAGACUUUAA-
..(((((((.......((((((((...........................)))))))).(((((..(((((.........))))).))))).)))))))...---.............- ( -22.23)
>DroSec_CAF1 809 119 - 1
GCUUUACGGCAUUUCACAGCUGAUAAUAAAGCCAAUCACCACGAAUCAGGAAUCAGCUGAUGGAAUCAGCAUCAAAGCUCAGUGCUUUUUAAACCGUAAACUAAUAAUCUAGACUUUAA-
..(((((((.((((((((((((((......(.....).((........)).)))))))).)))))).......(((((.....))))).....)))))))(((......))).......- ( -25.10)
>DroSim_CAF1 790 119 - 1
GCUUAACGGAAUUUCACAGCUGAUAAUAAAGCCAAUCACCACGAAUCCGGAAUCAGCUGAUGGAAUCAGCAUCAAAGCUCAGUGCUUUUUAAACCGUAAACUAAUAAUCUAGACUUUAA-
.....((((.((((((((((((((......(.....).((........)).)))))))).)))))).......(((((.....))))).....))))...(((......))).......- ( -23.10)
>DroYak_CAF1 2150 116 - 1
GCUUUACGGCAUUCUACAGCUGAUAACAGAGCCAAUCACCACGAAUCAAGAAUCAGCUGGUGGA-GCAGCAUCAAAGCUCAGUGCUUUUUAAACCGUAAUCCU---AACUUAACUCCAAA
(..((((((..(((((((((((((....((..(.........)..))....))))))).)))))-).......(((((.....))))).....))))))..).---.............. ( -24.40)
>consensus
GCUUUACGGAAUUUCACAGCUGAUAAUAAAGCCAAUCACCACGAAUCAAGAAUCAGCUGAUGGAAUCAGCAUCAAAGCUCAGUGCUUUUUAAACCGUAAACUA___AUCUAGACUUUAA_
...((((((.((((((((((((((...........................)))))))).)))))).......(((((.....))))).....))))))..................... (-20.84 = -21.78 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:01 2006