Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,371,997 – 6,372,116 |
Length | 119 |
Max. P | 0.847898 |
Location | 6,371,997 – 6,372,116 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.31 |
Mean single sequence MFE | -31.82 |
Consensus MFE | -25.45 |
Energy contribution | -26.32 |
Covariance contribution | 0.87 |
Combinations/Pair | 1.06 |
Mean z-score | -2.35 |
Structure conservation index | 0.80 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.847898 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6371997 119 + 22407834 AUUUCGGGGAUUGCUUUGUUUGUCAUU-UGGGGUAUUUGCCAACUGACCAACUACUGUCCAUCUGAAUGAUUUUGGUGUGCCUCUUUUGGCUUAAAUAGCAAUAUAUUCAGAUACCAAUA .....((((((......(((.((((.(-(((.(....).)))).)))).)))....))))(((((((((...(((.((((((......)))....))).)))..))))))))).)).... ( -34.50) >DroSec_CAF1 519 119 + 1 AUUUCGGGUAUUGCUUUGUUUGUCAUC-UGGGGUAUUUGCCAACUGACCAACUACUGUCCAUUUGAAUGAUUUUGGUGUGCCUCUUUUGGCAUAAAUAGCAAUAUAUUCAGAUACCAAUA .......((((((((.....(((((..-.(((((((..(((((..(((........)))(((....)))...))))))))))))...))))).....))))))))............... ( -29.60) >DroSim_CAF1 528 119 + 1 AUUUGGGGGAUUGCUUUGUUUGUCAUU-UGGGGUAUUUGCCAACUGACCAACUACUGUCCAUUUGAAUGAUUUUGGUGUGCCUCUUUUGGCAUAAAUAGCAAUAUAUUCAGAUACCAAUA ..((((.((((......(((.((((.(-(((.(....).)))).)))).)))....))))(((((((((...(((.((((((......)))))).....)))..))))))))).)))).. ( -34.80) >DroYak_CAF1 1874 120 + 1 AUUUCGGGGAUUGCUUUGUUUGUCAUUUUGGGGUAUUUGCCAGCUGACCAACUACUGACUAUUUGAACGAUUUUGUUGUGCCUCUUUUGGCAUAAAUAGCAAUUUAUUCAGACACCCAAC .....(((.........(((.((((..((((.(....).)))).)))).))).........((((((..(..((((((((((......))))))....)))).)..))))))..)))... ( -28.40) >consensus AUUUCGGGGAUUGCUUUGUUUGUCAUU_UGGGGUAUUUGCCAACUGACCAACUACUGUCCAUUUGAAUGAUUUUGGUGUGCCUCUUUUGGCAUAAAUAGCAAUAUAUUCAGAUACCAAUA .....((((((......(((.((((...(((.(....).)))..)))).)))....))))(((((((((...(((.((((((......)))))).....)))..))))))))).)).... (-25.45 = -26.32 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:26:00 2006