Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,367,713 – 6,367,864 |
Length | 151 |
Max. P | 0.942754 |
Location | 6,367,713 – 6,367,825 |
---|---|
Length | 112 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.16 |
Mean single sequence MFE | -38.22 |
Consensus MFE | -30.48 |
Energy contribution | -30.85 |
Covariance contribution | 0.37 |
Combinations/Pair | 1.07 |
Mean z-score | -2.50 |
Structure conservation index | 0.80 |
SVM decision value | 1.33 |
SVM RNA-class probability | 0.942754 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6367713 112 + 22407834 GCCGAGCUGCAAGAAUUCUACAAGCACAGUCGUCGGAAGAAACCCCGCAAGUGGGGUAGUGUGGGUAAUAAUAUUUGGUGUAGCGGCGAUGAGAGAGCACAAAUGC-GAAU-------AC (((..((((((.((((..(((..((((.....((....)).((((((....)))))).))))..))).....))))..))))))))).........(((....)))-....-------.. ( -35.60) >DroSec_CAF1 12813 109 + 1 GCCGAGCUGCAAGAAUUCUACAAGCUCAGUCGUCGGAAGAAACCCCUCAAGUGGGGUAGUGUGGGUAA---UAUUUGGUGUAGCGGCGAUGAGAGAGCACAAAUGC-GAAU-------AC (((..((((((.((((..(((..((.(.....((....)).(((((......))))).).))..))).---.))))..))))))))).........(((....)))-....-------.. ( -33.50) >DroEre_CAF1 12652 116 + 1 GCCGAGCUGCAAGAAUUCUACAAGCACAGUCGUCGGAAGAAACCCCGCAAGUGAGGUAGUGUGGGUAA---UAUUCGGUGUAGUGGCGGUGAGAGCGCACAAAUGC-AAAUACGGCAAAC ((((.((((((.((((..(((..((((.....((....)).(((((....).).))).))))..))).---.))))..)))))).(((.(....))))........-.....)))).... ( -38.50) >DroYak_CAF1 12916 117 + 1 GCCGAGCUGCAAGAAUUCUACAAGCACAGUCGUCGGAAGAAACCCCGCAAGUGGGGUAGUGUGGGUAA---UAUUUGGUGUAGCGGCGAUGAGAGAGCUCAAAUGCGAAAUACGGCAUAC ((((.((((((.((((..(((..((((.....((....)).((((((....)))))).))))..))).---.))))..)))))).(((.((((....))))..)))......)))).... ( -45.30) >consensus GCCGAGCUGCAAGAAUUCUACAAGCACAGUCGUCGGAAGAAACCCCGCAAGUGGGGUAGUGUGGGUAA___UAUUUGGUGUAGCGGCGAUGAGAGAGCACAAAUGC_AAAU_______AC (((..((((((.((((..(((..((((.....((....)).((((((....)))))).))))..))).....))))..))))))))).........((......)).............. (-30.48 = -30.85 + 0.37)
Location | 6,367,753 – 6,367,864 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 89.64 |
Mean single sequence MFE | -29.98 |
Consensus MFE | -23.26 |
Energy contribution | -23.39 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.06 |
Mean z-score | -1.95 |
Structure conservation index | 0.78 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.811049 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6367753 111 + 22407834 AACCCCGCAAGUGGGGUAGUGUGGGUAAUAAUAUUUGGUGUAGCGGCGAUGAGAGAGCACAAAUGC-GAAU-------ACGGCAUACGACAUACGGAAUAUAUGUACAUAAAAUCGAAA .((((((....)))))).(((((.(((....(((((.((((..((((..(....).))....((((-....-------...)))).))..)))).)))))))).))))).......... ( -28.50) >DroSec_CAF1 12853 107 + 1 AACCCCUCAAGUGGGGUAGUGUGGGUAA---UAUUUGGUGUAGCGGCGAUGAGAGAGCACAAAUGC-GAAU-------ACGGCAUACGACAUACGGAAUAUAUGUACAUAA-AUCGAAA .(((((......))))).(((((.(((.---(((((.((((..((((..(....).))....((((-....-------...)))).))..)))).)))))))).)))))..-....... ( -29.70) >DroEre_CAF1 12692 115 + 1 AACCCCGCAAGUGAGGUAGUGUGGGUAA---UAUUCGGUGUAGUGGCGGUGAGAGCGCACAAAUGC-AAAUACGGCAAACGGCAUACGGCAUACGGAAUAUAUGUACAUAAAAUCGAAA .(((((....).).))).(((((.(((.---(((((.((((.(((.((((....))(((....)))-.....)).)...((.....)))))))).)))))))).))))).......... ( -29.00) >DroYak_CAF1 12956 116 + 1 AACCCCGCAAGUGGGGUAGUGUGGGUAA---UAUUUGGUGUAGCGGCGAUGAGAGAGCUCAAAUGCGAAAUACGGCAUACGGCAUACGACAUACGGAAUAUAUGUACAUAAAAUCGAAA .((((((....)))))).(((((.(((.---(((((.((((..((((..((((....)))).((((........))))...))...))..)))).)))))))).))))).......... ( -32.70) >consensus AACCCCGCAAGUGGGGUAGUGUGGGUAA___UAUUUGGUGUAGCGGCGAUGAGAGAGCACAAAUGC_AAAU_______ACGGCAUACGACAUACGGAAUAUAUGUACAUAAAAUCGAAA .((((((....)))))).(((((.(((....(((((.((((..((((.........))....((((...............)))).))..)))).)))))))).))))).......... (-23.26 = -23.39 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:59 2006