Locus 235

Sequence ID 2L_DroMel_CAF1
Location 683,732 – 683,839
Length 107
Max. P 0.909128
window375

overview

Window 5

Location 683,732 – 683,839
Length 107
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 79.82
Mean single sequence MFE -27.18
Consensus MFE -18.17
Energy contribution -17.62
Covariance contribution -0.55
Combinations/Pair 1.19
Mean z-score -2.16
Structure conservation index 0.67
SVM decision value 1.06
SVM RNA-class probability 0.909128
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 683732 107 + 22407834
CAUGUUGCU-UUGUGUGUUGACAAACGUCUUGACAGGCGACAGGCAGCC----ACAGAACAACAUGUAACCAACAAAACA--AGCAACAAAGGCAAC--AAGCUGAAUCCAAAACA-
(((((((.(-(((((.((((.....(((((....))))).....)))))----))))).)))))))..............--.........(((...--..)))............- ( -26.50)
>DroPse_CAF1 90182 109 + 1
CAUGUUGCUUUUGUGUGUUGACAAACGUCUUGACAGGCGACAGGCAGCCAGCCACAAAACAUG--------AACAAAGCAGAAGUGGCAGUGCCAGAAGUGGCAGAAGCAGAAGCAG
..(((..(((((((.((((.(....(((((....)))))...(((.....)))........).--------))))..)))))))..))).(((((....)))))...((....)).. ( -33.00)
>DroSec_CAF1 71814 103 + 1
CAUGUUGCU-UUGUGUGUUGACAAACGUCUUGACAGGCGACAGGCAGCC----ACAGAACAACAAGUAA----CAAAACA--AGCAACAAAGGCAAC--AAGCUGAAUCCAAAACA-
..(((((((-(((((.((((.....(((((....))))).....)))))----))))).......((..----....)).--.))))))..(((...--..)))............- ( -24.20)
>DroEre_CAF1 80917 103 + 1
CAUGUUGCU-UUGUGUGUUGACAAACGUCUUGACAGGCGACAGGCAGCC----ACAGAACAACAA----CCAACAAAACA--AGCAACAAAGGCAAC--AAGCUGAAUCCAAAACA-
..(((((.(-(((((.((((.....(((((....))))).....)))))----))))).))))).----...........--.........(((...--..)))............- ( -23.30)
>DroYak_CAF1 76882 107 + 1
CAUGUUGCU-UUGUGUGUUGACAAACGUCUUGACAGGCGACAGGCAGCC----ACAGAACAACAAGCAAGCAACAAAACA--ACCAACAAAGCCAAC--AAGCUGAAUCCGAAACA-
..(((((((-(.((.(((((......((....)).(((........)))----......))))).)))))))))).....--........(((....--..)))............- ( -24.30)
>DroPer_CAF1 92097 109 + 1
CAUGUUGCUUUUGUGUGUUGACAAACGUCUUGACAGGCGACAGGCAGCCAGCCACAAAACAUG--------AACAAAGCAGAAGUGGCAGUGCCAGAAGUGGCAGAAGCACGAGGAG
..(((..(((((((.((((.(....(((((....)))))...(((.....)))........).--------))))..)))))))..))).(((((....)))))............. ( -31.80)
>consensus
CAUGUUGCU_UUGUGUGUUGACAAACGUCUUGACAGGCGACAGGCAGCC____ACAGAACAACAA______AACAAAACA__AGCAACAAAGCCAAC__AAGCUGAAUCCAAAACA_
..((((((((.(((.(((((((....)))..))))(((........)))............................))).))))))))............................ (-18.17 = -17.62 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:47 2006