Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,366,586 – 6,366,681 |
Length | 95 |
Max. P | 0.601393 |
Location | 6,366,586 – 6,366,681 |
---|---|
Length | 95 |
Sequences | 3 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 96.52 |
Mean single sequence MFE | -17.30 |
Consensus MFE | -16.67 |
Energy contribution | -16.67 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.55 |
Structure conservation index | 0.96 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.601393 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6366586 95 + 22407834 CACCGACCGAUCCC-CCUCGCAAUAUCAUUAUCUUUGGCGCUAGCUGCAUAAACAAAUUUAAAGCAUUUCCAAUAAAUUUGCAUUCGGUCGCCCGA ...(((((((....-....(((....((.......))((....))))).....((((((((............))))))))...)))))))..... ( -17.30) >DroSec_CAF1 11457 95 + 1 CACCGACCGAUCCC-CCUCGCAAUAUCAUUAUCUUUGGCGCUAGCUGCAUAAACAAAUUUAAAGAAUUUCCAAUAAAUUUGCAUUCGGUCGCCCGA ...(((((((....-....(((....((.......))((....))))).....((((((((..(......)..))))))))...)))))))..... ( -17.80) >DroEre_CAF1 11361 96 + 1 CAACGACCGAUACCUCCUCUCAAUAUCAUUAUCUUUGGCGCUAGCUGCAUAAACAAAUUUAAAGCAUUUCCAAUAAAUUUGCAUUCGGUCGCCCGA ...(((((((..........................(((....))).......((((((((............))))))))...)))))))..... ( -16.80) >consensus CACCGACCGAUCCC_CCUCGCAAUAUCAUUAUCUUUGGCGCUAGCUGCAUAAACAAAUUUAAAGCAUUUCCAAUAAAUUUGCAUUCGGUCGCCCGA ...(((((((..........................(((....))).......((((((((............))))))))...)))))))..... (-16.67 = -16.67 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:55 2006