Locus 2341

Sequence ID 2L_DroMel_CAF1
Location 6,342,286 – 6,342,399
Length 113
Max. P 0.736785
window3775

overview

Window 5

Location 6,342,286 – 6,342,399
Length 113
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 76.00
Mean single sequence MFE -32.62
Consensus MFE -20.46
Energy contribution -21.18
Covariance contribution 0.72
Combinations/Pair 1.04
Mean z-score -1.44
Structure conservation index 0.63
SVM decision value 0.44
SVM RNA-class probability 0.736785
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6342286 113 - 22407834
UGGACUUCGGAUUAGAUUGCUUUAGAUUGCUCAAAUUUAA-------CUAUACUUACUGUAUGGAAUAGCUCCUGGUUGGCUCCUCCUCCUUCUUGCGGCUACGCAGGAAGUAGAAGGCU
.......(.((((((...((((((((((.....)))))))-------((((((.....))))))...)))..)))))).)..(((.((.(((((((((....))))))))).)).))).. ( -33.30)
>DroPse_CAF1 83666 89 - 1
--GAAUUGAGGA-----UCCUCUAG------------------------AUACUCACUGUAUGGAAUAGCUGCGAGUGGGCUCCUCCUCCUUCUUGCGGCUUCUCAGAAAGUAAAAGGCU
--.....(((..-----..)))...------------------------.((((..(((...(((..(((((((((.(((........))).)))))))))))))))..))))....... ( -25.10)
>DroSec_CAF1 33440 108 - 1
UGGACUUCGGAA-----CCCUUCAGAUUGCUCAGAUUCAA-------UUAUACUUACUGUAUGGAAUAGCUCCUGGUUGGCUCCUCCUCCUUCUUGCGGCUGCGCAGGAAGUAGAAGGCU
....(((((((.-----((..((((...(((...((((..-------.(((((.....))))))))))))..))))..)).))).....(((((((((....)))))))))..))))... ( -33.70)
>DroSim_CAF1 35409 108 - 1
UGGACUUCGGAA-----CCCUUUAGACUGCUCCGAUUGGA-------CUAUACUUACUGUAUGGAAUAGCUCCUGGUUGGCUCCUCCUCCUUCUUGCGACUGCGCAGGAAGUAGAAGGCU
....(((((((.-----((..((((...(((((....)))-------((((((.....))))))....))..))))..)).))).....(((((((((....)))))))))..))))... ( -34.70)
>DroEre_CAF1 34071 115 - 1
CGGGCUUCGGAA-----CCCUUUAGAUGGCUCAGAUCUAAGUAUAAGCUAUACUCACUGUAUGGAAUAGCUCCUGGUUGGCUCCUCCUCCUUCUUGCGGCUGCGCAGGAAGUAGAAGGCU
.((.(((((((.-----((..((((..((((................((((((.....))))))...)))).))))..)).))).....(((((((((....)))))))))..)))).)) ( -34.31)
>DroYak_CAF1 33567 101 - 1
AGGAU-------------------AAUGGCUUAGACUUAACUAGAAGCUAUACUUACUGUAUGGAAUAGCUCCUGGUUGGCUCCUCCUCCUUCUUGCGGCUGCGCAGGAAGUAGAAGGCU
.....-------------------...(((((.((.((((((((.((((((.((........)).)))))).)))))))).))...((.(((((((((....))))))))).)).))))) ( -34.60)
>consensus
UGGACUUCGGAA_____CCCUUUAGAUUGCUCAGAUUUAA_______CUAUACUUACUGUAUGGAAUAGCUCCUGGUUGGCUCCUCCUCCUUCUUGCGGCUGCGCAGGAAGUAGAAGGCU
...............................................((((((.....))))))...((((.......))))(((.((.(((((((((....))))))))).)).))).. (-20.46 = -21.18 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:43 2006