Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 676,004 – 676,110 |
Length | 106 |
Max. P | 0.709301 |
Location | 676,004 – 676,110 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 94.81 |
Mean single sequence MFE | -31.85 |
Consensus MFE | -27.51 |
Energy contribution | -28.45 |
Covariance contribution | 0.94 |
Combinations/Pair | 1.08 |
Mean z-score | -1.76 |
Structure conservation index | 0.86 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.709301 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 676004 106 + 22407834 GCGGCAGGGUGUUCAAUGGCACCAGUAAGCCUUUCGAUUUUAUGGCUUCCAUUCGAUGUGGAAGCGUGAAGGAGUUAUUAAAAUGAGUCGUGAGUUGGUUAUGCUG .(((((.(((((......)))))....((((.((((.(((((((.(((((((.....))))))))))))))((.((((....)))).)).))))..)))).))))) ( -34.20) >DroSec_CAF1 64231 106 + 1 GCGGCAGGGUGUUCAAUGGCACCAGUAAGCCUUUCGAUUUUAUGGCUUCCAUUCGAUGUGGAAGCGUGAAGGAGUUAUUAAAAUGAGUCGUGAGUUGGUUAUGCUG .(((((.(((((......)))))....((((.((((.(((((((.(((((((.....))))))))))))))((.((((....)))).)).))))..)))).))))) ( -34.20) >DroSim_CAF1 68998 106 + 1 GCGGCAGGGUGUUCAAUGGCACCAGUAAGCCUUUCGAUUUUAUGGCUUCCAUUCGAUGUGGAAGCGUGAAGGAGUUAUUAAAAUGAGUCGUGAGUUGGUUAUGCUG .(((((.(((((......)))))....((((.((((.(((((((.(((((((.....))))))))))))))((.((((....)))).)).))))..)))).))))) ( -34.20) >DroYak_CAF1 69239 103 + 1 ---GCAGGGUGUUCAAUGCUACCAGUAAGCUUUUCGAUUUUAUGGCUUCGAUUCGAUUUGGAAGCCUGAAAGAGUUAUUAAAAUGAGUCGUGAGUGGGUUAUGCUG ---((..(((((.....)).))).((((.((.((((.(((((.((((((.(.......).)))))))))))((.((((....)))).)).)))).)).)))))).. ( -24.80) >consensus GCGGCAGGGUGUUCAAUGGCACCAGUAAGCCUUUCGAUUUUAUGGCUUCCAUUCGAUGUGGAAGCGUGAAGGAGUUAUUAAAAUGAGUCGUGAGUUGGUUAUGCUG .(((((.(((((......)))))....((((.((((.(((((((.(((((((.....))))))))))))))((.((((....)))).)).))))..)))).))))) (-27.51 = -28.45 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:44 2006