Locus 2334

Sequence ID 2L_DroMel_CAF1
Location 6,332,261 – 6,332,378
Length 117
Max. P 0.643499
window3762

overview

Window 2

Location 6,332,261 – 6,332,378
Length 117
Sequences 5
Columns 118
Reading direction forward
Mean pairwise identity 90.14
Mean single sequence MFE -28.12
Consensus MFE -22.88
Energy contribution -22.44
Covariance contribution -0.44
Combinations/Pair 1.10
Mean z-score -1.45
Structure conservation index 0.81
SVM decision value 0.23
SVM RNA-class probability 0.643499
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6332261 117 + 22407834
AUCUGUAUGUUGUGCAGCUAAAUGAUUAGAUUUUUAGGAAUCUUUGAAAAACGACGAGAGACUUU-UUUCAAUGUCAUGUUGAGCGUUUAUUUUUGCAACUUGUCUGCAAAGGUGCAC
...........((((.(((..(((((.((((((....))))))((((((((.(.(....).).))-)))))).)))))....)))....(((((((((.......))))))))))))) ( -27.70)
>DroSec_CAF1 23368 111 + 1
GUCUGUAUGUUGUGCAACUAAAUGCUUAGAUUUUUAGGAAUC--UGAAAAACGACGAGAGACU-----UCAAUGUCAUGUUGAGCGUUUAUUUUUGCAACUUGUUUGCAAGGGUGCAC
...........(((((..(((((((((((((((....)))))--)))....(((((...(((.-----.....))).))))).)))))))(((((((((.....)))))))))))))) ( -29.20)
>DroSim_CAF1 25290 118 + 1
GUCUGUAUGUUGUGCAACUAAAUGCUUAGAUUUUUAGGAAUCUUUGAAAAACGACGAGAGACUUUUUUUCAAUGUCAUGUUGAGCGUUUAUUUUUGCAACUUGUUUGCAAGGGUGCAC
...........(((((..(((((((((((((((....))))).((((((((...(....)....))))))))........))))))))))(((((((((.....)))))))))))))) ( -28.10)
>DroEre_CAF1 23824 114 + 1
UUCUAUAUGUUGUGCAGCUUAAUGCUUCGAUUUUUAGGAAUCUUUGAAAAACGACGAGA--CUUUUUUUCAAUGUCAUGUUGAGCGUUUAU--UUGCAACUUGUCUGCAGAGGUGCGC
...........(((((.(((..(((...(((((....)))))..........((((((.--.......(((((.....)))))(((.....--.)))..)))))).)))))).))))) ( -27.00)
>DroYak_CAF1 23605 116 + 1
UUCUAUAUGUUGUGCAGCUUAAUGCUUAGAUUUUUAGGAAUCUUUGAAAACCGACGAGA--UUUUUUUUCAAUGUCGUGUUGAGCGUUUAUUUUUGCAACUUGUCUGCAAAGGUGCAC
...........((((.(((((((((..((((((....)))))).........(((((((--.....))))...))))))))))))....(((((((((.......))))))))))))) ( -28.60)
>consensus
GUCUGUAUGUUGUGCAGCUAAAUGCUUAGAUUUUUAGGAAUCUUUGAAAAACGACGAGAGACUUUUUUUCAAUGUCAUGUUGAGCGUUUAUUUUUGCAACUUGUCUGCAAAGGUGCAC
...........(((((.((...(((...(((((....)))))..........((((((..........(((((.....)))))(((........)))..)))))).))).)).))))) (-22.88 = -22.44 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:31 2006