Locus 2333

Sequence ID 2L_DroMel_CAF1
Location 6,330,430 – 6,330,526
Length 96
Max. P 0.824164
window3761

overview

Window 1

Location 6,330,430 – 6,330,526
Length 96
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 72.11
Mean single sequence MFE -36.12
Consensus MFE -14.48
Energy contribution -14.02
Covariance contribution -0.47
Combinations/Pair 1.40
Mean z-score -2.03
Structure conservation index 0.40
SVM decision value 0.69
SVM RNA-class probability 0.824164
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6330430 96 - 22407834
CUGGUGGUGGCUGUAGAUACUGCCCAGGGGGGGCACAUUGUACGGCGGUGGCGGCGGUGGUGGCAUGGCCAAAGAUUGCUGC---UGCUGCUGGAGCUG
........(((((((.(...(((((.....)))))...).)))(((((..((((((((..((((...))))...))))))))---..)))))..)))). ( -42.80)
>DroGri_CAF1 14711 84 - 1
GUGAUGGUGAUUGUACAGGCUGCUU------------GUGUAGACCGGUGGCGGUGGUGGUGGCAUUGCCAA---UUGCUGUUGUAUCUGUUGCAAUUG
........(((((((((((((((..------------..))))....(..((((..(((((......))).)---)..))))..).)))).))))))). ( -26.20)
>DroSec_CAF1 21543 96 - 1
CUGGUGGUGGCUGUAGAUACUGCCCAGGGGGGGCACAUUGUACGGCGGCGGCGGCGGAGGUGGCAUGGCCAAAGAUUGCUGC---UGCUGCUGGAGCUG
........(((((((.(...(((((.....)))))...).)))((((((((((((((...((((...))))....)))))))---)))))))..)))). ( -43.50)
>DroSim_CAF1 23473 96 - 1
CUGGUGGUGGCUGUAGAUACUGCCCAGGGGGGGCACAUUGUACGGCGGUGGCGGCGGAGGUGGCAUGGCCAAAGAUUGCUGC---UGCUGCUGGAGCUG
........(((((((.(...(((((.....)))))...).)))(((((..(((((((...((((...))))....)))))))---..)))))..)))). ( -41.00)
>DroMoj_CAF1 47967 84 - 1
AUGAUGAUGAUUGUACAGGCUGCUG------------GUGUAGACCGGCGGUGGUGGUGGUGGCAUGGCCAA---UUGCUGUUGGAUUUGCUGCAGCUG
.................((((((..------------..((((((((((((..(((((.((...)).))).)---)..))))))).))))).)))))). ( -31.70)
>DroAna_CAF1 22264 93 - 1
GUGGUGAUG---GUACAGAUUGGCCAUCGGUGGCACAUUGUACGGCGGAGGUGGUGGCGGUGGCAUGGCCAGAGAUUGCUGC---UGUUUCUGGAGUUG
.........---((((((..((((((....)))).))))))))..((((((..(..((((((((...))))....))))..)---..))))))...... ( -31.50)
>consensus
CUGGUGGUGGCUGUACAGACUGCCCAGGGGGGGCACAUUGUACGGCGGUGGCGGCGGUGGUGGCAUGGCCAAAGAUUGCUGC___UGCUGCUGGAGCUG
((((((((..........)))).))))...............((((((..(((((((...((((...))))....))))))).....))))))...... (-14.48 = -14.02 +  -0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:30 2006