| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 6,326,567 – 6,326,687 |
| Length | 120 |
| Max. P | 0.583366 |
| Location | 6,326,567 – 6,326,687 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 79.39 |
| Mean single sequence MFE | -49.63 |
| Consensus MFE | -28.02 |
| Energy contribution | -28.33 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.56 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.583366 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6326567 120 + 22407834 GAGGCACUGUUAGAGCGAAAAAAGUUGCUAAGUCAGCUGCGCCUGUUGCACAUAGCCUGUGCCGCCAAAGCACGGAUGCGCAGCUGUACCCUCACUCGAUCGUCACGUGACGAGCCGCUC ..(((...((.(((((((......)))))..(((((((((((((((.(((((.....))))).((....))))))..))))))))).)).)).))....(((((....)))))))).... ( -43.50) >DroPse_CAF1 55090 120 + 1 GAGGCUCUGCUGGAGCGCAAGAAGCUCCUCAGUCAGCUGCGACUCCUCCAUAUUGCCUGUGCCGCCAAGGCACGGAUGAGGAGCUGCACGUUGACGCGCUCUUCCCGCGACGAGGCCCUC ((((((((((.(((((((..((......)).((((((((((.((((((.((.....(((((((.....))))))))))))))).)))).)))))))))))))....)))..)))..)))) ( -54.40) >DroGri_CAF1 10062 120 + 1 GAGGCUGGCCUGGAACGCAAAAAGCUGCUCAGCCAGCUGCGUUUGCUGCACAUUGCAUGUGCAGCCAAAGCGCGCAUGCGCAGCUGCAUCUUGACGCGUUCCUCACGCGACGAACCACUC .(((....)))(((((((.....(((....)))(((((((((.((((((((((...)))))))((......))))).))))))))).........))))))).................. ( -47.60) >DroMoj_CAF1 42659 120 + 1 GAGGCUGGCCUGGAAAGCAAAAAACUGUUAAGUCAGCUGCGCUUGCUGCACAUCGCGUGCGCGGCCAAGGCACGCAUGCGCAGUUGCAUUUUAACGCGUUCCUCACGCGAUGAACCGCUA ((((...((((....)).........((((((.(((((((((.....((((.....))))(((((....)).)))..)))))))))...))))))))...))))..(((......))).. ( -44.30) >DroAna_CAF1 18335 120 + 1 GAGGCGCUGCUGGAGCGCAAGAAGCUACUGAGCCAGCUGCGGCUCCUGCACAUCGCCUGCGCGGCCAAGGCCCGCAUGCGCAGCUGCACCCUGACGCGCUCCUCCCGGGACGAGCCCCUC ((((.(((...(((((((.....(((....)))(((((((.((....)).....((.((((.(((....))))))).))))))))).........)))))))((....))..))).)))) ( -56.20) >DroPer_CAF1 53202 120 + 1 GAGGCUCUGCUGGAGCGCAAAAAGCUCCUCAGUCAGCUGCGACUCCUCCACAUUGCCUGUGCCGCCAAGGCACGGAUGAGGAGCUGCACGUUGACGCGCUCUUCCCGCGACGAGGCCCUC (((((((.((.(((((.......)))))...((((((((((.((((((.......((.(((((.....)))))))..)))))).)))).))))))))((.......))...)))..)))) ( -51.80) >consensus GAGGCUCUGCUGGAGCGCAAAAAGCUGCUCAGUCAGCUGCGACUCCUGCACAUUGCCUGUGCCGCCAAGGCACGCAUGCGCAGCUGCACCUUGACGCGCUCCUCACGCGACGAGCCCCUC ...((......(((((((.....(((....)))((((((((..(((.(((((.....))))).((....))..)))..)))))))).........)))))))....))............ (-28.02 = -28.33 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:28 2006