Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,315,005 – 6,315,121 |
Length | 116 |
Max. P | 0.992794 |
Location | 6,315,005 – 6,315,121 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 94.37 |
Mean single sequence MFE | -29.78 |
Consensus MFE | -24.98 |
Energy contribution | -24.74 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -2.33 |
Structure conservation index | 0.84 |
SVM decision value | 2.35 |
SVM RNA-class probability | 0.992794 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6315005 116 + 22407834 CGCUAAAAAUUG-UGCAAGAAGACUUUUAUGCACCAGGCGGCCAA-AAGUUUUCAUGGUUUUUCUGGUGUGAAUGCAACAGCUUGUAUUUAUACUCAUAAUUGAAAUAAUUGCAGAAA .........((.-(((((((((((((((.(((.....)))...))-))))))))...(((((..((((((((((((((....)))))))))))).)).....)))))..))))).)). ( -30.40) >DroSec_CAF1 6240 117 + 1 CGCUAAAAAUUGUUGCAAGAAGACUUUUAUGCACCAGGCGGCCAA-AAGUUUUCAUGGUUUUUCUGGUGUGAAUGCAACAGCUUGUAUUUAUACUCAUAAUUGAAAUAAUUGCAGAAA ............((((((((((((((((.(((.....)))...))-))))))))...(((((..((((((((((((((....)))))))))))).)).....)))))..))))))... ( -29.60) >DroSim_CAF1 6149 117 + 1 CACUAAAAAUUGUUGCAAGAAGACUUUUAUGCACCAGGCGGCCAA-AAGUUUUCAUGGUUUUUCUGGUGUGAAUGCAACAGCUUGUAUUUAUACUCAUAAUUGAAAUAAUUGCAGAAA ............((((((((((((((((.(((.....)))...))-))))))))...(((((..((((((((((((((....)))))))))))).)).....)))))..))))))... ( -29.60) >DroEre_CAF1 6250 114 + 1 CGC-GAAAAUUG-UGCAAGAAGAUUUUCAUGCACCAGGCGGCCAAAAAGUUUUCAUGGUU--UCUGGUGUGAAUGCAACAGCUUGUAUUUAUACUCAUAAUUGAAAUAAUUGCAGAAA ...-.....((.-(((((......(((((.((((((((.(((((...........)))))--))))))))((((((((....))))))))...........)))))...))))).)). ( -28.70) >DroYak_CAF1 6280 112 + 1 CGCUGGAAAUUG-UGCAA---GAUUUUCAUGCACCAGGCGGCCAAAAAGUUUUCAUGGUU--UCUGGUGUGAAUGCAACAGCUUGUAUUUAUACUCAUAAUUGAAAUAAUUGCAGAAA .........((.-(((((---...(((((.((((((((.(((((...........)))))--))))))))((((((((....))))))))...........)))))...))))).)). ( -30.60) >consensus CGCUAAAAAUUG_UGCAAGAAGACUUUUAUGCACCAGGCGGCCAA_AAGUUUUCAUGGUUUUUCUGGUGUGAAUGCAACAGCUUGUAUUUAUACUCAUAAUUGAAAUAAUUGCAGAAA .............(((((......(((((.((((((((..((((...........))))...))))))))((((((((....))))))))...........)))))...))))).... (-24.98 = -24.74 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:20 2006