Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,304,475 – 6,304,571 |
Length | 96 |
Max. P | 0.558090 |
Location | 6,304,475 – 6,304,571 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 94.05 |
Mean single sequence MFE | -24.98 |
Consensus MFE | -22.62 |
Energy contribution | -22.62 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.13 |
Structure conservation index | 0.91 |
SVM decision value | 0.05 |
SVM RNA-class probability | 0.558090 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6304475 96 - 22407834 GGCUAUUGCCUGCCGGUCCU-------CGGCUCCUCGUUGACAUUUUCAUUAGCAAAUUAAUUUUAAUUGAUUACAUUCUAUGCGAGGAGGCGCACACAAUGU (((........))).((...-------((.(((((((((((.....)))......(((((((....))))))).........)))))))).))...))..... ( -23.80) >DroSec_CAF1 140439 96 - 1 GGCUAUUGCCUGCCGGUCCU-------CGGCUCCUCGUUGACAUUUUCAUUAGCAAAUUAAUUUUAAUUGAUUACAUUCUAUGCGAGGAGGCGCACACAAUGU (((........))).((...-------((.(((((((((((.....)))......(((((((....))))))).........)))))))).))...))..... ( -23.80) >DroSim_CAF1 162208 96 - 1 GGCUAUUGCCUGCCGGUUCU-------CGGCUCCUCGUUGACAUUUUCAUUAGCAAAUUAAUUUUAAUUGAUUACAUUCUAUGCGAGGAGGCGCACACAAUGU (((........))).((...-------((.(((((((((((.....)))......(((((((....))))))).........)))))))).))...))..... ( -23.80) >DroEre_CAF1 140478 103 - 1 GGCUAUUGCCUGGCGGUCCUCCGUUGCCGGCUCCUCGUUGACAUUUUCAUUAGCAAAUUAAUUUUAAUUGAUUACAUUCUAUGCGAGGAGGCGCACACAAUGC (((....))).(((((....)))))((.(.(((((((((((.....)))......(((((((....))))))).........)))))))).)))......... ( -28.40) >DroYak_CAF1 156151 103 - 1 GGCUAUUGCCUGUCGGUCCUUCGUUGCCGGCUCCUCGUUGACAUUUUCAUUAGCAAAUUAAUUUUAAUUGAUUACAUUCUAUGCGAGGAGGCGCACACAAUGC (((....)))............(((((.(.(((((((((((.....)))......(((((((....))))))).........)))))))).)))).))..... ( -25.10) >consensus GGCUAUUGCCUGCCGGUCCU_______CGGCUCCUCGUUGACAUUUUCAUUAGCAAAUUAAUUUUAAUUGAUUACAUUCUAUGCGAGGAGGCGCACACAAUGU (((....))).................((.(((((((((((.....)))......(((((((....))))))).........)))))))).)).......... (-22.62 = -22.62 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:16 2006