Locus 2323

Sequence ID	2L_DroMel_CAF1
Location	6,302,820 – 6,302,934
Length	114
Max. P	0.801117

overview

Window 5

Location	6,302,820 – 6,302,934
Length	114
Sequences	4
Columns	114
Reading direction	forward
Mean pairwise identity	73.94
Mean single sequence MFE	-28.67
Consensus MFE	-19.36
Energy contribution	-19.17
Covariance contribution	-0.19
Combinations/Pair	1.22
Mean z-score	-1.60
Structure conservation index	0.68
SVM decision value	0.62
SVM RNA-class probability	0.801117
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6302820 114 + 22407834
UGGUAUUUGUAUAUUUCGGCACUGAGCCAAAAUUGAAUUCUACGCAGGCUGAAUGGUGUAAGAAGUGCGUGCAGGGGUAGAGACUACUGUAAAUAUGCAUAUAGCAAGGCGAAC
((.(((.(((((((((.(((.....))).............(((((..((..........))...)))))((((..((....))..))))))))))))).))).))........ ( -26.10)
>DroSec_CAF1 138810 90 + 1
UGGUAUUUGCAUAUUUCGGCAAUGAGCCAGAA------------------------UGUAAGAAGUGCGUGCAGGGGUAGAGACUACUGUAAAUUUGCAUGUAGUAAGGCGAAC
.....((((((((((..(((.....)))..))------------------------)))....(.((((((((((..((.((....)).))..)))))))))).)...))))). ( -27.20)
>DroSim_CAF1 160591 90 + 1
UGGUAUUUGCAUAUUUCGGCAAUGAGCCAGAA------------------------UGUAAGAAGUGCGUGCAGGGGUAGAGACUACUGUAAAUAUGCAUGUAGCAAGGCGAAC
..((.((((((((((..(((.....)))..))------------------------)))......((((((((....((.((....)).))....))))))))))))))).... ( -25.30)
>DroEre_CAF1 138793 110 + 1
UGGUAUUUGCAUAUUUCGGCACUGCGCUCGAAUUGAGCUCCACGCAGGGGGAAUCGGUCCAGAAGUGCGUGCAGAGGUAGAGACUACUGUAGAUAUGCACAUAC----GAGAGC
..((((.((((((((((.((((.((((((..(((((.((((.....))))...)))))...).)))))))))...(((((...)))))).))))))))).))))----...... ( -36.10)
>consensus
UGGUAUUUGCAUAUUUCGGCAAUGAGCCAGAA________________________UGUAAGAAGUGCGUGCAGGGGUAGAGACUACUGUAAAUAUGCAUAUAGCAAGGCGAAC
((.(((.((((((((..(((.....))).........................................(((((..((....))..))))))))))))).))).))........ (-19.36 = -19.17 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:15 2006