Locus 2321

Sequence ID 2L_DroMel_CAF1
Location 6,297,561 – 6,297,671
Length 110
Max. P 0.905657
window3740

overview

Window 0

Location 6,297,561 – 6,297,671
Length 110
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.82
Mean single sequence MFE -27.90
Consensus MFE -22.72
Energy contribution -22.75
Covariance contribution 0.03
Combinations/Pair 1.05
Mean z-score -2.42
Structure conservation index 0.81
SVM decision value 1.04
SVM RNA-class probability 0.905657
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6297561 110 + 22407834
AUUUUU----------UUUUUUUUUUGUACCCCCCAGGUGGUCACAACAAUGGAUGACAAUGAGUCGUCCAUUGACAAGAACAGUCUGUACCAUGAGCCCUUCAACGCGAACAUGUACAC
......----------.....((((((((((((...)).))).....(((((((((((.....)))))))))))))))))).....(((((.(((.((........))...)))))))). ( -29.90)
>DroVir_CAF1 178106 112 + 1
UUUUUUUUUCUUUCACCUU--------UCGCCCUCAGGUGGUCACAACAAUGGAUGACAAUGAGUCGUCCAUUGACAAGAACAGUCUGUACCAUGAGCCCUUCAAUGUGAACAUGUACAC
.......(((((((((((.--------........))))))......(((((((((((.....)))))))))))..))))).....(((((.(((..(.(......).)..)))))))). ( -29.20)
>DroGri_CAF1 159604 111 + 1
U-UUUCAUUCUAUCACCUU--------UUGCCCUUAGGUGGUCACAACAAUGGAUGACAAUGAGUCGUCCAUUGACAAGAACAGUCUGUACCAUGAGCCCUUCAAUGUGAACAUGUACAC
.-.....(((((((((((.--------........))))))).....(((((((((((.....)))))))))))...)))).....(((((.(((..(.(......).)..)))))))). ( -30.60)
>DroWil_CAF1 243163 93 + 1
----------------U-----------UUCCCUCAGGUGGUCACAACAAUGGAUGACAAUGAGUCGUCCAUUGACAAGAACAGUCUGUACCAUGAGCCCUUCAAUGUGAACAUGUACAC
----------------.-----------....((((((((.......(((((((((((.....)))))))))))...(((....))).)))).)))).......(((....)))...... ( -26.00)
>DroMoj_CAF1 237019 112 + 1
GUUUCUUUUCUUUCACCUU--------UCGCCCUUAGGUGGUCACAACAAUGGAUGACAAUGAGUCGUCCAUUGACAAGAACAGUCUGUACCAUGAGCCCUUCAAUGUGAACAUGUACAC
....((.(((((((((((.--------........))))))......(((((((((((.....)))))))))))..))))).))..(((((.(((..(.(......).)..)))))))). ( -30.80)
>DroAna_CAF1 81169 99 + 1
CUUUUU----------UUU-----------CCCCCAGGUGGUCACAACAAUGGAUGACAAUGAGUCCUCCAUUGACAAGAAUAGUCUGUACCACGAACCCUUCAACGUUAACAUGUACAC
......----------...-----------.......(((((.((..(((((((.(((.....))).)))))))...(((....)))))))))).......................... ( -20.90)
>consensus
UUUUUU__________CUU________UCGCCCUCAGGUGGUCACAACAAUGGAUGACAAUGAGUCGUCCAUUGACAAGAACAGUCUGUACCAUGAGCCCUUCAAUGUGAACAUGUACAC
.....................................(((((.((..(((((((((((.....)))))))))))...(((....)))))))))).......................... (-22.72 = -22.75 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:10 2006