Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,289,316 – 6,289,472 |
Length | 156 |
Max. P | 0.956800 |
Location | 6,289,316 – 6,289,410 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 89.55 |
Mean single sequence MFE | -34.82 |
Consensus MFE | -27.22 |
Energy contribution | -27.54 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.11 |
Mean z-score | -2.28 |
Structure conservation index | 0.78 |
SVM decision value | 1.47 |
SVM RNA-class probability | 0.956800 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6289316 94 + 22407834 UUUUGACUU-----UUUACGUAGAGGGGAGAUCCUUUCGGGCGUUUGGUUACGAAUUC----GCCCUAUGGUGUCCUGACUUGGGGCGCUGUAAGCCGCGAUU .........-----....(((.((((((....))))))(((((((((....))))..)----))))(((((((((((.....)))))))))))....)))... ( -33.60) >DroSec_CAF1 125304 94 + 1 UUUGGACUU-----UUUACGUAGAGGGGAGAUCCUCUCGGGCGUUUCGUUACGAAUUC----GCCCUAUGGUGUCCUGACUUGGGGCGCUGUAAGGCGCGAUU (((((((..-----...((((.((((((....))))))..))))...))).)))).((----(((((((((((((((.....)))))))))).))).)))).. ( -37.90) >DroSim_CAF1 140272 94 + 1 UUUGGACUU-----UUUACGUAGAGGGGAGAUCCUCUCGGGCGUUUCGUUACGAAUUC----GCCCUAUGGUGUCCUGACUUGGGGCGCUGUAAGCCGCGAUU .........-----....(((.((((((....))))))(((((.((((...))))..)----))))(((((((((((.....)))))))))))....)))... ( -37.00) >DroEre_CAF1 125031 98 + 1 UUUGGAUUU-----UUUACGUGGAGGGGAGAUCCUCUCGGGGUUUUCGCUACGAAUUGGUGUGUCCUAUGGUGUCCUGACUUGGGGCGCUGUAAGCCGCGAUU .........-----....(((((((.((((((((.....)))))))).))................(((((((((((.....)))))))))))..)))))... ( -32.70) >DroYak_CAF1 139446 98 + 1 UUUGGGUUUUUUUUUUUACGUAGCGAGGAGAUCCUCUCGGGGU-UUCGUUACGAAUUC----GCCCUAUGGUGUCCUGACUUGGGGCGCUGUAAGCCGCGAUU ..................((((((((((...(((....))).)-)))))))))...((----((..(((((((((((.....)))))))))))....)))).. ( -32.90) >consensus UUUGGACUU_____UUUACGUAGAGGGGAGAUCCUCUCGGGCGUUUCGUUACGAAUUC____GCCCUAUGGUGUCCUGACUUGGGGCGCUGUAAGCCGCGAUU ..................(((.((((((....))))))((((..((((...)))).......))))(((((((((((.....)))))))))))....)))... (-27.22 = -27.54 + 0.32)
Location | 6,289,372 – 6,289,472 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 83.86 |
Mean single sequence MFE | -31.93 |
Consensus MFE | -24.36 |
Energy contribution | -25.75 |
Covariance contribution | 1.39 |
Combinations/Pair | 1.21 |
Mean z-score | -2.60 |
Structure conservation index | 0.76 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.834115 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6289372 100 + 22407834 CUAUGGUGUCCUGACUUGGGGCGCUGUAAGCCGCGAUUAACGUAAAAUAGCGUAUGAAGAGCGGCCAACAGUGGCUGCAAAAAAAUAUGCCACACGAAGC .(((((((((((.....))))))))))).(((((..((.((((......))))...))..))))).....(((((.............)))))....... ( -35.22) >DroVir_CAF1 161809 93 + 1 CU-CAGCCUGCUGUCUC---GUGUUGUAAACCGCGAUUAACGUAA-AUAGCGGAAAA--AAUGGCGCACAGUACCAGCAAAAAAAUAUGCCACAGAUAGA ..-.......((((((.---(((..(((..((((.(((......)-)).))))....--..(((..(...)..))).........)))..))))))))). ( -20.10) >DroSec_CAF1 125360 100 + 1 CUAUGGUGUCCUGACUUGGGGCGCUGUAAGGCGCGAUUAACGUAAAAUAGCGUAUGAAGAGCGGCCAACAGUGGCUGCAAAAAAAUAUGCCACACAAAGC .(((((((((((.....))))))))))).((((......((((......)))).......(((((((....))))))).........))))......... ( -34.00) >DroSim_CAF1 140328 100 + 1 CUAUGGUGUCCUGACUUGGGGCGCUGUAAGCCGCGAUUAACGUAAAAUAGCGUAUGAAGAGCGGCCAACAGUGGCUGCAAAAAAAUAUGCCACACGAAGC .(((((((((((.....))))))))))).(((((..((.((((......))))...))..))))).....(((((.............)))))....... ( -35.22) >DroEre_CAF1 125091 93 + 1 CUAUGGUGUCCUGACUUGGGGCGCUGUAAGCCGCGAUUAACGUAA-AUAGCGUAUAAAGAGCGGCCAGCAGUGGCUGAAAGAA------CCAAGUGAGCC ..........((.(((((((.((((((..(((((..(((((((..-...)))).)))...)))))..)))))).)(....)..------)))))).)).. ( -32.50) >DroYak_CAF1 139506 100 + 1 CUAUGGUGUCCUGACUUGGGGCGCUGUAAGCCGCGAUUAACGUAAAAUAGCGUAUAAAGAGCGGCCAACAGUGGCUGCAAAAAAAUAUGCCACACGAACC .(((((((((((.....))))))))))).(((((..(((((((......)))).)))...))))).....(((((.............)))))....... ( -34.52) >consensus CUAUGGUGUCCUGACUUGGGGCGCUGUAAGCCGCGAUUAACGUAAAAUAGCGUAUAAAGAGCGGCCAACAGUGGCUGCAAAAAAAUAUGCCACACGAAGC .(((((((((((.....))))))))))).(((((..(((((((......)))).)))...))))).....(((((.............)))))....... (-24.36 = -25.75 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:25:09 2006