Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,286,221 – 6,286,331 |
Length | 110 |
Max. P | 0.990259 |
Location | 6,286,221 – 6,286,331 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 96.64 |
Mean single sequence MFE | -25.49 |
Consensus MFE | -21.32 |
Energy contribution | -22.32 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.37 |
Structure conservation index | 0.84 |
SVM decision value | 1.93 |
SVM RNA-class probability | 0.982998 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6286221 110 + 22407834 UGGGGCUCUCAAAAGUUCUCCUGCUAUCCCCUUGGCAACAUAACUUUUGCUUUGAGGACCAAACGUAAGCUGCUUAAAUUUUGUUUUUCCACCGGAAAAACCUAUCCAAC (((..(((.((((((((....(((((......)))))....))))))))....)))..))).....................((((((((...))))))))......... ( -25.70) >DroSec_CAF1 122482 110 + 1 UGGGGCUCUCAAAAGUCCUCCUGCUAUCCCCUUGGCAACAUAACUUUUGCUUUGAGAACCAAACAUAAGCUGCUUAAAUUUUGUUUUUCCACUGGAAAAACCUAUCCAAC (((..(((.(((((((.....(((((......))))).....)))))))....)))..))).....................((((((((...))))))))......... ( -25.60) >DroSim_CAF1 137201 110 + 1 UGGGGCUCUCAAAAGUUCUGCUGCUAUCCCCUUGGCAACAUAACUUUUGCUUUGAGGACCAAACAUAAGCUGCUUAAAUUUUGUUUUUCCACCGGAAAAACCUAUCCAAC (((..(((.((((((((.((.(((((......))))).)).))))))))....)))..))).....................((((((((...))))))))......... ( -28.70) >DroEre_CAF1 122137 110 + 1 UGGGGCUCUCAAAAGUUCUCCCGGUAUCCCCUUGGCAACAUAACUUUUGCUUUGAGUACCAAACAUAAGCUGCUUAAAUUUUGUUUUUCCACCGGAAAAACCUAUCCAAC (((..(((.((((((((.....((.....)).((....)).))))))))....)))..))).....................((((((((...))))))))......... ( -23.20) >DroYak_CAF1 135393 110 + 1 UGGGGCACUCAAAAGUUCUCCUGGUAUCCCCUUGGCAACAUAACUUUUGCUUUGAGGACCAAACAUAAGCUGCUUAAAUUUUGUUUUUCCACCGGAAAAACCUAUCCAAC (((((((((.....((((((..((((......((....)).......))))..))))))........)).))))........((((((((...))))))))....))).. ( -24.24) >consensus UGGGGCUCUCAAAAGUUCUCCUGCUAUCCCCUUGGCAACAUAACUUUUGCUUUGAGGACCAAACAUAAGCUGCUUAAAUUUUGUUUUUCCACCGGAAAAACCUAUCCAAC (((..(((.((((((((....(((((......)))))....))))))))....)))..))).....................((((((((...))))))))......... (-21.32 = -22.32 + 1.00)
Location | 6,286,221 – 6,286,331 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 96.64 |
Mean single sequence MFE | -30.32 |
Consensus MFE | -28.78 |
Energy contribution | -29.02 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -1.71 |
Structure conservation index | 0.95 |
SVM decision value | 2.20 |
SVM RNA-class probability | 0.990259 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6286221 110 - 22407834 GUUGGAUAGGUUUUUCCGGUGGAAAAACAAAAUUUAAGCAGCUUACGUUUGGUCCUCAAAGCAAAAGUUAUGUUGCCAAGGGGAUAGCAGGAGAACUUUUGAGAGCCCCA .((((((..((((((((...))))))))...))))))(((((..((.((((.(......).)))).))...)))))...((((....(((((....)))))....)))). ( -29.80) >DroSec_CAF1 122482 110 - 1 GUUGGAUAGGUUUUUCCAGUGGAAAAACAAAAUUUAAGCAGCUUAUGUUUGGUUCUCAAAGCAAAAGUUAUGUUGCCAAGGGGAUAGCAGGAGGACUUUUGAGAGCCCCA ..(((....((((((((...)))))))).......(((((.....)))))((((((((((.....((((.(((((((....)).)))))....))))))))))))))))) ( -31.10) >DroSim_CAF1 137201 110 - 1 GUUGGAUAGGUUUUUCCGGUGGAAAAACAAAAUUUAAGCAGCUUAUGUUUGGUCCUCAAAGCAAAAGUUAUGUUGCCAAGGGGAUAGCAGCAGAACUUUUGAGAGCCCCA .........((((((((...)))))))).......(((((.....)))))((..(((....((((((((.((((((..........)))))).)))))))).)))..)). ( -30.30) >DroEre_CAF1 122137 110 - 1 GUUGGAUAGGUUUUUCCGGUGGAAAAACAAAAUUUAAGCAGCUUAUGUUUGGUACUCAAAGCAAAAGUUAUGUUGCCAAGGGGAUACCGGGAGAACUUUUGAGAGCCCCA .((((....((((((((...))))))))........((((((((.(((((........))))).))))..)))).))))((((....(((((....)))))....)))). ( -28.50) >DroYak_CAF1 135393 110 - 1 GUUGGAUAGGUUUUUCCGGUGGAAAAACAAAAUUUAAGCAGCUUAUGUUUGGUCCUCAAAGCAAAAGUUAUGUUGCCAAGGGGAUACCAGGAGAACUUUUGAGUGCCCCA .((((....((((((((...))))))))........((((((((.(((((........))))).))))..)))).))))((((.((((((((....))))).))))))). ( -31.90) >consensus GUUGGAUAGGUUUUUCCGGUGGAAAAACAAAAUUUAAGCAGCUUAUGUUUGGUCCUCAAAGCAAAAGUUAUGUUGCCAAGGGGAUAGCAGGAGAACUUUUGAGAGCCCCA .((((....((((((((...))))))))........((((((((.(((((........))))).))))..)))).))))((((....(((((....)))))....)))). (-28.78 = -29.02 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:58 2006