a score=0 s 2L_DroMel_CAF1 6285159 99 + 22407834 GAAAAAGCGG---------------CCGGGAGAGCCAGAGGGCCGGGACGUGGCCGGGAGGGAUGCUUGGGUCGACGAGGAGUCGGCCAUUAGCGUUUUAUGGCCAAAAAGAAA s DroSec_CAF1 121419 93 + 1 GGAAAAACGG---------------CCGGGAAAGCCA-GGGGCCGGGAUGG-----GGAGGGAUGCUUGGGUCGACGAGGAGUCGGCCAUUAGCGUUUUAUGGCCAAAAAGAAA s DroSim_CAF1 136113 99 + 1 GGAAAAGCGG---------------CCGGGAAAGCCACGGGGCCGGGACGGGGCCGGGAGGGAUGCUUGGGUCGACGAGGAGUCGGCCAUUAGCGUUUUAUGGCCAAAAAGAAA s DroEre_CAF1 121094 106 + 1 GGAAGAGCGGGAGAGACCGGGAAACCCGGGAAAGCCAGGGGGCCGGGCC--------GAAGGAUGCUUGGGUCGACGAGCAGUCGGCCAUUAGCGUUUUAUGGCCAAAAAGAAA s DroYak_CAF1 134427 80 + 1 GGAAAAGCGG---------------CCGGGAAAACGAAGGG-------------------AGAUGCUUGGGUCGACGAGGAGUCGGCCAUUAGCGUUUUAUGGCCAAAAAGAAA s DroAna_CAF1 72971 82 + 1 GCAAGA---------------------GUGAAAGU-AGGGUGCA--AAC--------GAAAGAGGUUUCGGCCGACGUGGAUUCGACCAUUAGCGUUUUAUGGUAAAAAGGAAA