Locus 2313

Sequence ID	2L_DroMel_CAF1
Location	6,277,736 – 6,277,829
Length	93
Max. P	0.929921

overview

Window 1

Location	6,277,736 – 6,277,829
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	91.08
Mean single sequence MFE	-16.51
Consensus MFE	-16.15
Energy contribution	-15.87
Covariance contribution	-0.28
Combinations/Pair	1.19
Mean z-score	-1.36
Structure conservation index	0.98
SVM decision value	1.20
SVM RNA-class probability	0.929921
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6277736 93 - 22407834
UUACUGAUAAACAAAUUGGUUUCAUUAUCGCAGCGAGUGAAGUCAACAAAUAUUCAUCUAUUUCGCUCGCAUUGCCCUCGUAAUGUUUACUUA
.................(((..((((((.((((((((((((((................)))))))))))..)))....))))))...))).. ( -19.99)
>DroSec_CAF1 113833 93 - 1
UUACUCAUAAACAAAUUGGUUUCAGUAUCGCAGCGAGUGAAGUCAACAAAUAUUCAUCUAUUUCGCUCGCAUUGCCCUCGUAAUGUUUACUUA
.......((((((.((((....))))...((((((((((((((................)))))))))))..)))........)))))).... ( -19.69)
>DroSim_CAF1 128594 93 - 1
UUACUCAUAAACAAAUUUUUUUCAGUAUCGCAGCGAGUGAAGUCAACAAAUAUUCAUCUAUUUCGCUCGCAUUGCCCUCGUAAUGUUUACUUA
.......(((((....................(((((((((((................)))))))))))(((((....)))))))))).... ( -18.39)
>DroEre_CAF1 113454 93 - 1
UUAUUGAUAAACAAAUUUGUUUCAGCAUCGCAGCGCUUGAAGUCAACAAAUAUUCAUCCGCUUCACUCGCAUUGCCCUCGUAAUGUUUACUUA
...((((..((((....))))))))....(.((((..((((...........))))..)))).)....(((((((....)))))))....... ( -14.70)
>DroYak_CAF1 126897 93 - 1
UUUUUGAUAAACAAAUUUGUUUCAGUAUCGCAGCGAAUAAAGUCAACACAUAGUCAUCCGUUUCAUUCGCAUUGCCCUCGUAAUGUUUACUUA
...(((((......(((((((.(......).)))))))...)))))......................(((((((....)))))))....... (  -9.80)
>consensus
UUACUGAUAAACAAAUUUGUUUCAGUAUCGCAGCGAGUGAAGUCAACAAAUAUUCAUCUAUUUCGCUCGCAUUGCCCUCGUAAUGUUUACUUA
.......(((((....................(((((((((((................)))))))))))(((((....)))))))))).... (-16.15 = -15.87 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:52 2006