Locus 2312

Sequence ID 2L_DroMel_CAF1
Location 6,276,791 – 6,276,882
Length 91
Max. P 0.988329
window3720

overview

Window 0

Location 6,276,791 – 6,276,882
Length 91
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 75.42
Mean single sequence MFE -27.40
Consensus MFE -14.44
Energy contribution -15.17
Covariance contribution 0.72
Combinations/Pair 1.05
Mean z-score -2.58
Structure conservation index 0.53
SVM decision value 2.12
SVM RNA-class probability 0.988329
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 6276791 91 - 22407834
----UAAAG--AA----UAUUAGCCCAGUGUGCGGCGUUGGAACUCCAAUUGUUGCUGCU--------GGAAAAGUUUUGAGCAGAAUAAAUUGCACAAAAUUUAAUUA
----.....--..----.......((((((.((((((((((....)))).))))))))))--------))..((((((((.((((......)))).))))))))..... ( -27.30)
>DroSec_CAF1 112970 102 - 1
----CAAA-AGAACUGGCAUCAGUCCAGUGUGCGGCGGAGGAACUCCAAUUGUUGCUGCUGG--AGCUGGAAAAGUUUUGAGCAGAAUAAAUUGCACAAAAUUUAAUUA
----....-...((((((....).)))))((((((.((((...))))..(((((.(((((((--((((.....)))))).)))))))))).))))))............ ( -29.90)
>DroSim_CAF1 127691 103 - 1
----UAGAGGGAACUGGCAUCAGCCCAGUGUGCGGCGGAGGAACUCCAAUUGUUGCUGCUGG--AGCUGGAAAAGUUUUGAGCAGAAUAAAUUGCACAAAAUUUAAUUA
----...((....))....(((((((((((.(((((((.((....))..)))))))))))))--.)))))..((((((((.((((......)))).))))))))..... ( -32.80)
>DroEre_CAF1 112321 87 - 1
--------------AGGUUUCUGGUCACUGUGCGGCGGAGGAACUCCAAUUGUUGCUGCUG--------GAAAAGUUCUGAGCAGAAUAAAUUGCACAAAAUUUAAUUA
--------------..............(((((((.((((...))))..(((((.((((((--------((.....))).)))))))))).)))))))........... ( -21.40)
>DroYak_CAF1 125901 109 - 1
AGUCUAGAGAGAAAAGGUAUCUGGUCACUGUGCGGCGGAGGAACUCCAAUUGUUGCUGCUGGAAAGCUGGAAAAGUUUCGAGCAGAAUAAAUUGCACAAAAUUUAAUUA
.(.(((((...........))))).)..(((((((.((((...))))..(((((.(((((.((((.((.....)))))).)))))))))).)))))))........... ( -31.20)
>DroAna_CAF1 67599 75 - 1
--------------------------ACGGCGCGGCGGCAGAACUCCAAUUGUUGCUACUG--------GCAAACUUUUACGCAGUAUAAAUUGCGCAAAAGUUAAUUA
--------------------------...((.(((..(((..((.......)))))..)))--------)).(((((((.((((((....)))))).)))))))..... ( -21.80)
>consensus
____UA_A___AA__GGUAUCAGCCCACUGUGCGGCGGAGGAACUCCAAUUGUUGCUGCUG_______GGAAAAGUUUUGAGCAGAAUAAAUUGCACAAAAUUUAAUUA
...............................(((((((.((....)).....))))))).............((((((((.((((......)))).))))))))..... (-14.44 = -15.17 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:51 2006