Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 6,271,442 – 6,271,557 |
Length | 115 |
Max. P | 0.537940 |
Location | 6,271,442 – 6,271,557 |
---|---|
Length | 115 |
Sequences | 5 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 93.83 |
Mean single sequence MFE | -40.10 |
Consensus MFE | -33.74 |
Energy contribution | -34.74 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.06 |
Mean z-score | -1.27 |
Structure conservation index | 0.84 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.537940 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 6271442 115 + 22407834 GCGUUAAAAGGCCGCCCUGUGGCCAUAAAAACUAUGCACGACCACGGCGGCGACUGCGACUGCGACUAGGAGCACUGCACUACUGCUGCUCCACUCGCUGUGUGCUCAAGUGGUA .........((((((...))))))......(((((....((.((((.((((((.(((....)))....((((((..(((....)))))))))..)))))))))).))..))))). ( -40.30) >DroSec_CAF1 107512 109 + 1 GAGUUAAAAGGCCGCCCUGUGGCCAUAAAAACUAUGCACGACCACGGCGGCGACU------GCGACUAGGAGCACUGCACUACUGCUGCUCCACUCGCUGUGUGCUCAAGUGGUA .((((....((((((...)))))).....)))).......(((((...((((((.------((((...((((((..(((....)))))))))..)))).)).))))...))))). ( -40.70) >DroSim_CAF1 122251 115 + 1 GCGUUAAAAGGCCGCCCUGUGGCCAUAAAAACUAUGCACGACCACGGCGGCGACUGCGACUGCGACUAGGAGCACUGCACUACUGCUGCUCCACUCGCUGUGUGCUCAAGUGGUA .........((((((...))))))......(((((....((.((((.((((((.(((....)))....((((((..(((....)))))))))..)))))))))).))..))))). ( -40.30) >DroEre_CAF1 107002 115 + 1 GCGUUAAAAGGCCGCCCUGUGGCCAUAAAAACUAUGCACGACCACGACCACGACGGCGACUCCGACUAGGAGCACUGCACCACUGCCGCUCCACUCGCUGUGUGCUCAAGUGGUA ((((.....((((((...)))))).........))))...(((((((.(((.(((((((.........(((((...(((....))).)))))..)))))))))).))..))))). ( -38.94) >DroYak_CAF1 120325 115 + 1 GCGUUAAAAGGCCGCCCUGUGGCCAUAAAAACUAUGCACGACCACGACUACGACUGCGACUGCGACUAGGGGCAGUGCACUACUGCUGCUCCACUCGCUGUGUGCUCAAGUGGUA ((((.....((((((...)))))).........)))).........(((((....(((((.((((...((((((((........))))))))..)))).)).)))....))))). ( -40.24) >consensus GCGUUAAAAGGCCGCCCUGUGGCCAUAAAAACUAUGCACGACCACGGCGGCGACUGCGACUGCGACUAGGAGCACUGCACUACUGCUGCUCCACUCGCUGUGUGCUCAAGUGGUA .........((((((...))))))......(((((....((.(((.(((((((...((....))....((((((..(((....)))))))))..)))))))))).))..))))). (-33.74 = -34.74 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:24:50 2006